HL_4V8C_010

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V8C|1|AA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_010 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0745

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V8C|1|AA|U|305
4V8C|1|AA|U|306
4V8C|1|AA|G|307
4V8C|1|AA|G|308
4V8C|1|AA|G|309
4V8C|1|AA|A|310
4V8C|1|AA|A|311
4V8C|1|AA|G|312

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AU

50S ribosomal protein L24