HL_4V8C_017

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_017 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.2013

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8C|1|AA|C|544
4V8C|1|AA|G|545
4V8C|1|AA|C|546
4V8C|1|AA|A|547
4V8C|1|AA|A|548
4V8C|1|AA|G|549

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A2

50S ribosomal protein L21

Chain AM

50S ribosomal protein L13