HL_4V8C_080

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4V8C|1|BA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_080 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.1288

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8C|1|BA|A|225
4V8C|1|BA|G|226
4V8C|1|BA|A|227
4V8C|1|BA|A|228
4V8C|1|BA|A|229
4V8C|1|BA|U|230

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BO

50S ribosomal protein L15