HL_4V8C_112

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4V8C|1|BA|C|1493, 4V8C|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_112 not in the Motif Atlas

Geometric match to HL_2A43_001

Geometric discrepancy: 0.3759

The information below is about HL_2A43_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8C|1|BA|G|1491
4V8C|1|BA|G|1492
4V8C|1|BA|C|1493
4V8C|1|BA|A|1494
4V8C|1|BA|A|1495
4V8C|1|BA|A|1496
4V8C|1|BA|U|1497
4V8C|1|BA|C|1498
4V8C|1|BA|C|1499

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BD

50S ribosomal protein L2