HL_4V8C_127

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V8C|1|BA|G|2210, 4V8C|1|BA|G|2211, 4V8C|1|BA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_127 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.3623

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V8C|1|BA|C|2209
4V8C|1|BA|G|2210
4V8C|1|BA|G|2211
4V8C|1|BA|A|2212
4V8C|1|BA|U|2213
4V8C|1|BA|G|2215

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28

Chain CG

30S RIBOSOMAL PROTEIN S4