HL_4V8C_214

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

4V8C|1|DA|U|1136, 4V8C|1|DA|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_214 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.393

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8C|1|DA|G|1133
4V8C|1|DA|G|1134
4V8C|1|DA|U|1135
4V8C|1|DA|U|1136
4V8C|1|DA|C|1137
4V8C|1|DA|G|1138
4V8C|1|DA|G|1139
4V8C|1|DA|C|1140
4V8C|1|DA|C|1141

Current chains

Chain DA

16S ribosomal RNA

Nearby chains