HL_4V8C_224
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8C_224 not in the Motif Atlas
- Geometric match to HL_6PMO_005
- Geometric discrepancy: 0.1418
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
4V8C|1|DB|G|64
4V8C|1|DB|U|65
4V8C|1|DB|U|66
4V8C|1|DB|C|67
4V8C|1|DB|A|68
4V8C|1|DB|A|69
4V8C|1|DB|G|70
4V8C|1|DB|U|71
4V8C|1|DB|C|72
Current chains
- Chain DB
- TRNA-LEU
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BP
- 50S ribosomal protein L16
- Chain BV
- 50S ribosomal protein L25
Coloring options: