Motif HL_28252.4 Version HL_28252.4 of this group appears in releases 3.94 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6	2-8
1	HL_6GSK_219	6GSK	0.7129	0	T-loop related	3L	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW
2	HL_4V9K_035	4V9K	0.3823	0	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
3	HL_2ZNI_003	2ZNI	0.3508	0	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
4	HL_4WSM_254	4WSM	0.3739	0	T-loop with 2 stacked bulged bases	3L	tRNA	G	64	U	65	U	66	C	67	A	68	A	69	G	70	U	71	C	72	ncWW	ntWH
5	HL_4GXY_002	4GXY	0.3225	0	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH
6	HL_6NWY_035	6NWY	0.3071	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
7	HL_2CSX_003	2CSX	0.2122	0	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
8	HL_1GAX_006	1GAX	0.3066	0	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
9	HL_1J2B_002	1J2B	0.2768	0	T-loop with 2 stacked bulged bases	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
10	HL_4V87_109	4V87	0.2231	0	T-loop with 2 stacked bulged bases	BB	TRNA-LEU	G	64	U	65	U	66	C	67	A	68	A	69	G	70	U	71	C	72	cWW	ntWH
11	HL_4V8Q_110	4V8Q	0.1735	0	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
12	HL_8SP9_004	8SP9	0.1812	0	T-loop with 2 stacked bulged bases	C	tRNA scaffold,CVB3 Cloverleaf RNA	G	130	U	131	U	132	C	133	A	134	A	135	G	136	U	137	C	138	cWW	ntWH
13	HL_2D6F_006	2D6F	0.1694	0	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
14	HL_5UD5_003	5UD5	0.1646	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
15	HL_2DRA_001	2DRA	0.1869	0	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
16	HL_8Z1P_002	8Z1P	0.1443	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
17	HL_8WND_005	8WND	0.1297	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
18	HL_7MDL_004	7MDL	0.1358	0	T-loop with 2 stacked bulged bases	E	RNA (90-MER)	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
19	HL_1WZ2_008	1WZ2	0.1503	0	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
20	HL_3AMU_003	3AMU	0.1721	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
21	HL_4WZD_210	4WZD	0.1833	0	T-loop with 2 stacked bulged bases	2K	tRNA	G	62\|\|\|\|P_1	5MU	63\|\|\|\|P_1	PSU	64\|\|\|\|P_1	C	65\|\|\|\|P_1	G	66\|\|\|\|P_1	A	67\|\|\|\|P_1	A	68\|\|\|\|P_1	U	69\|\|\|\|P_1	C	70\|\|\|\|P_1	cWW	ntWH
22	HL_5B63_004	5B63	0.1660	0	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
23	HL_4TUE_035	4TUE	0.1998	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
24	HL_7UZ0_003	7UZ0	0.1861	0	T-loop with 2 stacked bulged bases	A	tRNA	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
25	HL_1U0B_003	1U0B	0.1782	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
26	HL_4GCW_002	4GCW	0.1376	0	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
27	HL_7EQJ_006	7EQJ	0.1508	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
28	HL_7K98_003	7K98	0.1563	0	T-loop with 2 stacked bulged bases	C	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
29	HL_6CU1_001	6CU1	0.1877	0	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
30	HL_1FFY_003	1FFY	0.1566	0	T-loop with 2 stacked bulged bases	T	ISOLEUCYL-TRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
31	HL_1QU2_003	1QU2	0.1566	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
32	HL_6MJ0_009	6MJ0	0.1645	0	T-loop with 2 stacked bulged bases	B	tRNA-like 3' UTR element	G	66	U	67	G	68	C	69	A	70	A	71	C	72	U	73	C	74	cWW	tWH
33	HL_8K0Y_002	8K0Y	0.1403	0	T-loop with 2 stacked bulged bases	A	RNA (56-MER)	G	37	U	38	U	39	C	40	A	41	A	42	U	43	U	44	C	45	cWW	tWH
34	HL_4V90_034	4V90	0.1381	0	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
35	HL_5X6B_003	5X6B	0.1134	0	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
36	HL_2ZZM_004	2ZZM	0.1305	0	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
37	HL_9DFC_105	9DFC	0.1166	0	T-loop with 2 stacked bulged bases	1x	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
38	HL_3AL0_003	3AL0	0.1066	0	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
39	HL_7LYF_003	7LYF	0.1153	0	T-loop with 2 stacked bulged bases	A	tRNA	G	116	U	117	U	118	C	119	A	120	A	121	G	122	U	123	C	124	cWW	tWH
40	HL_8UO6_004	8UO6	0.0939	0	T-loop with 2 stacked bulged bases	A	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
41	HL_8UO6_008	8UO6	0.0932	0	T-loop with 2 stacked bulged bases	B	HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
42	HL_7KJT_003	7KJT	0.0794	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
43	HL_2ZUE_003	2ZUE	0.0735	0	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
44	HL_4RDX_003	4RDX	0.0000	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
45	HL_6UFM_003	6UFM	0.0710	0	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
46	HL_3WQY_003	3WQY	0.0794	0	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
47	HL_2ZZN_006	2ZZN	0.0939	0	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
48	HL_5AH5_008	5AH5	0.0834	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
49	HL_2BTE_004	2BTE	0.1063	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
50	HL_4JXZ_003	4JXZ	0.1048	0	T-loop with 2 stacked bulged bases	B	RNA (71-MER)	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
51	HL_1J1U_003	1J1U	0.1064	0	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
52	HL_5AXM_003	5AXM	0.1285	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
53	HL_4YCO_003	4YCO	0.1118	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
54	HL_7MRL_003	7MRL	0.0923	0	T-loop with 2 stacked bulged bases	A	tRNA	G	56	U	57	U	58	C	59	A	60	A	61	G	62	U	63	C	64	cWW	tWH
55	HL_6UGG_006	6UGG	0.0804	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
56	HL_4YYE_003	4YYE	0.0929	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
57	HL_5HR7_006	5HR7	0.0941	0	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
58	HL_8VU0_003	8VU0	0.0941	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
59	HL_1QTQ_003	1QTQ	0.1069	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
60	HL_5HR6_003	5HR6	0.1197	0	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
61	HL_6PMO_005	6PMO	0.1402	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
62	HL_7E8O_003	7E8O	0.0958	0	T-loop with 2 stacked bulged bases	X	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
63	HL_8G9Z_004	8G9Z	0.1126	0	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
64	HL_6JXM_003	6JXM	0.1092	0	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
65	HL_3RG5_008	3RG5	0.0978	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
66	HL_4LCK_003	4LCK	0.1254	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
67	HL_3ZGZ_003	3ZGZ	0.1183	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
68	HL_4WJ4_003	4WJ4	0.1174	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
69	HL_4YCP_003	4YCP	0.1140	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
70	HL_5WT1_003	5WT1	0.1271	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
71	HL_4P5J_003	4P5J	0.1400	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
72	HL_4V9Q_215	4V9Q	0.1409	0	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
73	HL_4WT8_217	4WT8	0.1408	0	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
74	HL_8S95_005	8S95	0.1145	0	T-loop with 2 stacked bulged bases	C	Lysine tRNA scaffold,Poliovirus cloverleaf RNA	G	133	U	134	U	135	C	136	A	137	A	138	G	139	U	140	C	141	cWW	tWH
75	HL_8V1H_002	8V1H	0.1103	0	T-loop with 2 stacked bulged bases	A	pre-mascRNA	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
76	HL_7YSE_003	7YSE	0.1385	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
77	HL_7UQ6_003	7UQ6	0.1246	0	T-loop with 2 stacked bulged bases	B	tRNA	G	64	U	65	U	66	C	67	G	68	A	69	G	70	U	71	C	72	cWW	tWH
78	HL_2AZX_006	2AZX	0.1543	0	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
79	HL_3WFS_003	3WFS	0.1982	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
80	HL_3EPH_003	3EPH	0.1971	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
81	HL_1N78_003	1N78	0.1805	0	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
82	HL_3TUP_003	3TUP	0.2035	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
83	HL_8K2Z_003	8K2Z	0.2058	0	T-loop with 2 stacked bulged bases	A	RNA (57-MER)	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
84	HL_6JQ6_003	6JQ6	0.2018	0	T-loop with 2 stacked bulged bases	U	RNA (81-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
85	HL_2DER_006	2DER	0.1722	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
86	HL_3FOZ_006	3FOZ	0.1601	0	T-loop with 2 stacked bulged bases	D	tRNA(Phe)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
87	HL_3IGI_001	3IGI	0.1804	0	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
88	HL_2DU3_003	2DU3	0.1276	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	A	958	U	959	C	960	cWW	tWH
89	HL_4X4V_001	4X4V	0.1372	0	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	G	18	U	19	C	20	cWW	tWH
90	HL_3W3S_004	3W3S	0.1254	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
91	HL_3ADD_004	3ADD	0.1552	0	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
92	HL_4MGN_004	4MGN	0.1663	0	T-loop with 2 stacked bulged bases	B	tRNA-glycine	G	52	U	53	U	54	C	55	G	56	A	57	G	58	U	59	C	60	cWW	tWH
93	HL_5WWT_002	5WWT	0.1723	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
94	HL_3AM1_004	3AM1	0.2267	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
95	HL_5E6M_003	5E6M	0.2213	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
96	HL_4QEI_003	4QEI	0.2494	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
97	HL_3AKZ_012	3AKZ	0.1859	0	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
98	HL_3ICQ_005	3ICQ	0.2229	0	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
99	HL_3OVB_001	3OVB	0.1957	0	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
100	HL_8K1E_002	8K1E	0.2166	0	T-loop with 2 stacked bulged bases	A	RNA (58-MER)	G	39	U	40	U	41	C	42	G	43	A	44	G	45	U	46	C	47	cWW	tWH
101	HL_4V8N_145	4V8N	0.2315	0	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
102	HL_7U2I_105	7U2I	0.2678	0	T-loop with 2 stacked bulged bases	1w	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
103	HL_1H3E_004	1H3E	0.1888	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	MAD	58	A	59	U	60	C	61	cWW
104	HL_1H4S_003	1H4S	0.2867	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	G	58	A	59	U	60	C	61	cWW	tWH
105	HL_2FMT_006	2FMT	0.3069	0	T-loop with 2 stacked bulged bases	D	FORMYL-METHIONYL-TRNAFMET2	G	53	5MU	54	PSU	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
106	HL_5E81_213	5E81	0.2501	0	T-loop with 2 stacked bulged bases	2K	tRNA	G	54	5MU	55	PSU	56	C	57	A	58	A	59	A	60	U	61	C	62	ncWW	tWH
107	HL_6CFJ_108	6CFJ	0.2537	0	T-loop with 2 stacked bulged bases	1x	tRNA	G	53	5MU	54	PSU	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
108	HL_2DLC_003	2DLC	0.2660	0	T-loop with 2 stacked bulged bases	Y	T-RNA (76-MER)	G	553	5MU	554	PSU	555	C	556	G	557	1MA	558	C	559	U	560	C	561	cWW	tWH
109	HL_3KFU_006	3KFU	0.2310	0	T-loop with 2 stacked bulged bases	L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
110	HL_1B23_003	1B23	0.2583	0	T-loop with 2 stacked bulged bases	R	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
111	HL_1FIR_003	1FIR	0.2639	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	2MU	54	PSU	55	C	56	A	57	1MA	58	G	59	U	60	C	61	cWW	tWH
112	HL_1IL2_003	1IL2	0.2455	0	T-loop with 2 stacked bulged bases	C	tRNA	G	953	5MU	954	PSU	955	C	956	A	957	A	958	U	959	U	960	C	961	cWW	tWH
113	HL_8JOZ_004	8JOZ	0.2384	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
114	HL_1QF6_003	1QF6	0.2507	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
115	HL_7VNV_003	7VNV	0.2218	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	SUR	54	PSU	55	OMC	56	7S3	57	1MA	58	G	59	U	60	C	61	cWW	tWH
116	HL_1F7U_003	1F7U	0.2212	0	T-loop with 2 stacked bulged bases	B	TRNA(ARG)	G	953	5MU	954	PSU	955	C	956	A	957	1MA	958	G	959	U	960	C	961	cWW	tWH
117	HL_1SER_002	1SER	0.2456	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
118	HL_1VTQ_003	1VTQ	0.2261	0	T-loop with 2 stacked bulged bases	A	T-RNA-ASP	G	52	5MU	53	PSU	54	C	55	A	56	A	57	U	58	U	59	C	60	cWW	tWH
119	HL_4JYZ_003	4JYZ	0.2269	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	5MU	954	PSU	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
120	HL_5E81_207	5E81	0.2402	0	T-loop with 2 stacked bulged bases	1K	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
121	HL_6GSL_210	6GSL	0.2073	0	T-loop with 2 stacked bulged bases	1L	tRNA	G	54	5MU	55	PSU	56	C	57	G	58	A	59	A	60	U	61	C	62	cWW	tWH
122	HL_5IBB_211	5IBB	0.2927	0	T-loop with 2 stacked bulged bases	1L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
123	HL_5IB8_209	5IB8	0.2695	0	T-loop with 2 stacked bulged bases	1L	tRNA	G	53	5MU	54	PSU	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
124	HL_5T5A_001	5T5A	0.2956	0	T-loop with 2 stacked bulged bases	A	DNA/RNA (71-MER)	G	21	U	22	G	23	C	24	A	25	A	26	G	27	C	28	C	29	cWW	tWH
125	HL_4WF9_018	4WF9	0.2978	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	609	U	610	U	611	U	612	G	613	U	614	A	615	G	616	A	618	cWW
126	HL_5J7L_150	5J7L	0.3012	1	T-loop with 2 stacked bulged bases	DA	LSU rRNA	U	566	U	567	U	568	U	569	G	570	U	571	A	572	U	573	A	575	cWW
127	HL_9DFE_016	9DFE	0.3492	1	T-loop with 2 stacked bulged bases	1A	LSU rRNA	U	566	A	567	U	568	U	569	G	570	A	571	A	572	G	573	A	575	cWW
128	HL_7A0S_018	7A0S	0.3226	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	575	A	576	U	577	U	578	G	579	A	580	A	581	G	582	A	584	cWW
129	HL_8P9A_126	8P9A	0.3533	1	T-loop with 2 stacked bulged bases	AR	LSU rRNA	U	640	C	641	U	642	U	643	G	644	A	645	A	646	A	647	A	649	cWW
130	HL_4V9F_018	4V9F	0.2847	1	T-loop with 2 stacked bulged bases	0	LSU rRNA	U	623	U	624	U	625	U	626	G	627	1MA	628	A	629	A	630	A	632	cWW	ntWH
131	HL_5Y85_003	5Y85	0.2618	0	T-loop with 2 stacked bulged bases	D	DNA/RNA (50-MER)	G	11	U	12	G	13	C	14	A	15	A	16	G	17	U	18	C	19	cWW	tWH
132	HL_8V1I_006	8V1I	0.3920	0	T-loop with 2 stacked bulged bases	B	mascRNA	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
133	HL_5J7L_165	5J7L	0.2752	0	T-loop with 2 stacked bulged bases	DA	LSU rRNA	G	1281	U	1282	G	1283	A	1284	A	1285	A	1286	A	1287	G	1288	C	1289	cWW	tWH
134	HL_4V9F_034	4V9F	0.3711	0	T-loop with 2 stacked bulged bases	0	LSU rRNA	G	1387	U	1388	G	1389	A	1390	G	1391	A	1392	A	1393	C	1394	C	1395	cWW	tWH
135	HL_8P9A_143	8P9A	0.2917	0	T-loop with 2 stacked bulged bases	AR	LSU rRNA	A	1462	U	1463	G	1464	A	1465	G	1466	A	1467	A	1468	C	1469	U	1470	cWW	tWH
136	HL_4WF9_032	4WF9	0.3046	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1318	U	1319	G	1320	A	1321	G	1322	A	1323	A	1324	U	1325	C	1326	cWW	tWH
137	HL_9DFE_031	9DFE	0.2687	0	T-loop with 2 stacked bulged bases	1A	LSU rRNA	G	1281	U	1282	G	1283	A	1284	G	1285	A	1286	A	1287	U	1288	C	1289	cWW	tWH
138	HL_7A0S_032	7A0S	0.2934	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1294	U	1295	G	1296	A	1297	G	1298	A	1299	A	1300	U	1301	C	1302	cWW	tWH
139	HL_2CZJ_008	2CZJ	0.3477	0	T-loop with 2 stacked bulged bases	H	tmRNA (63-MER)	G	53	5MU	54	PSU	55	C	56	G	57	A	58	C	59	U	60	C	61	ncWW
140	HL_4WSM_211	4WSM	0.3489	0	T-loop with 2 stacked bulged bases	1K	tRNA	G	64	5MU	65	PSU	66	C	67	A	68	A	69	G	70	U	71	C	72	cWW
141	HL_1P6V_004	1P6V	0.4991	0	T-loop with 2 bulged bases not stacked	B	45-MER	G	45	U	46	U	47	C	48	G	49	A	50	U	51	U	52	C	53	cWW	ntWW
142	HL_4R4V_003	4R4V	0.5916	0	T-loop related	A	VS ribozyme RNA	G	689	U	690	U	691	G	692	A	693	C	694	U	695	A	696	C	697	cWW
143	HL_2FMT_005	2FMT	0.5879	0	T-loop related	D	FORMYL-METHIONYL-TRNAFMET2	G	31	OMC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCAAGUC	19
GUUCGAAUC	17
GUUCAAAUC	17
GUUCGAGUC	14
GUUCGAUUC	12
GUUCAAUUC	5
GUUCGAUCC	5
G(5MU)(PSU)CAAAUC	4
GUGAGAAUC	4
G(5MU)(PSU)CGAAUC	4
GUUCGACUC	3
GCGAAUC	3
GCGACUC	3
GUGCAAGUC	2
GUGCAACUC	2
UAUUGAAGCA	2
GUGAAACUC	1
GUUAGAUUC	1
GUUCGAGCC	1
GUUCGAGAC	1
GUGAGAGUC	1
G(5MU)(PSU)CGAUUC	1
GCGAUC	1
GCAGAUC	1
G(5MU)(PSU)CG(1MA)CUC	1
GCGAGUC	1
G(2MU)(PSU)CA(1MA)GUC	1
G(5MU)(PSU)CAAUUC	1
G(SUR)(PSU)(OMC)(7S3)(1MA)GUC	1
GCAGUC	1
GCAAUUC	1
GCGAUCC	1
GUGCAAGCC	1
UUUUGUAGAA	1
UUUUGUAUAA	1
UCUUGAAACA	1
UUUUG(1MA)AAAA	1
GUGAAAAGC	1
GUGAGAACC	1
AUGAGAACU	1
G(5MU)(PSU)CAAGUC	1
GUUGACUAC	1
GUCAUAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCAAGU	19
UUCGAAU	17
UUCAAAU	17
UUCGAGU	14
UUCGAUU	12
(5MU)(PSU)CGAAU	7
UUCAAUU	5
UUCGAUC	5
(5MU)(PSU)CAAAU	4
UGAGAAU	4
UUCGACU	3
(5MU)(PSU)CGACU	3
UGCAAGU	2
UGCAACU	2
(5MU)(PSU)CAAUU	2
AUUGAAGC	2
UGAGAAC	2
UGAAACU	1
UUAGAUU	1
UUCGAGC	1
UUCGAGA	1
UGAGAGU	1
(5MU)(PSU)CGAUU	1
(5MU)(PSU)CG(MAD)AU	1
(5MU)(PSU)CAGAU	1
(5MU)(PSU)CG(1MA)CU	1
(5MU)(PSU)CGAGU	1
(2MU)(PSU)CA(1MA)GU	1
(SUR)(PSU)(OMC)(7S3)(1MA)GU	1
(5MU)(PSU)CA(1MA)GU	1
(5MU)(PSU)CGAUC	1
UGCAAGC	1
UUUGUAGA	1
UUUGUAUA	1
CUUGAAAC	1
UUUG(1MA)AAA	1
UGAAAAG	1
(5MU)(PSU)CAAGU	1
UUGACUA	1
(OMC)UCAUAA	1

Release history

Release	3.94
Date	2025-02-26
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with 2 stacked bulged bases (139)
T-loop related (3)
T-loop with 2 bulged bases not stacked (1)
Basepair signature: cWW-tWH-F-F-F-F-F
Heat map statistics: Min 0.00 | Avg 0.28 | Max 0.92

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Coloring options: Nucleotide numbers

Motif HL_28252.4 Version HL_28252.4 of this group appears in releases 3.94 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_28252.4 Version HL_28252.4 of this group appears in releases 3.94 to 3.94

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Csv

Json