HL_4V8C_241

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCAAUAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_241 not in the Motif Atlas

Geometric match to HL_4WSM_251

Geometric discrepancy: 0.3577

The information below is about HL_4WSM_251

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8C|1|CB|C|47
4V8C|1|CB|C|48
4V8C|1|CB|C|49
4V8C|1|CB|A|50
4V8C|1|CB|A|51
4V8C|1|CB|U|52
4V8C|1|CB|A|53
4V8C|1|CB|G|54
4V8C|1|CB|G|55
4V8C|1|CB|G|56

Current chains

Chain CB

TRNA-LEU

Nearby chains