HL_4V8C_242
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUCAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8C_242 not in the Motif Atlas
- Homologous match to HL_4TUE_218
- Geometric discrepancy: 0.1907
- The information below is about HL_4TUE_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V8C|1|CC|G|53
4V8C|1|CC|G|54
4V8C|1|CC|U|55
4V8C|1|CC|U|56
4V8C|1|CC|C|57
4V8C|1|CC|A|58
4V8C|1|CC|A|59
4V8C|1|CC|A|60
4V8C|1|CC|U|61
4V8C|1|CC|C|62
4V8C|1|CC|C|63
Current chains
- Chain CC
- TRNA-FMET
Nearby chains
- Chain A3
- 50S ribosomal protein L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AP
- 50S ribosomal protein L16
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