Motif HL_23827.2 Version HL_23827.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DME_003 | 6DME | 0.6271 | 3 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 84 | A | 85 | A | 87 | C | 88 | cWW | cWW | tWH | tWH | |
| 2 | HL_5EL4_223 | 5EL4 | 0.4035 | 3 | 3L | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 58 | U | 60 | C | 61 | C | 62 | ncWW | ||||
| 3 | HL_4V7M_040 | 4V7M | 0.0000 | 3 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | A | 57 | U | 59 | C | 60 | C | 61 | cWW | ||||
| 4 | HL_4WT8_137 | 4WT8 | 0.3037 | 3 | C3 | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 58 | U | 60 | C | 61 | C | 62 | cWW | ||||
| 5 | HL_5E81_236 | 5E81 | 0.4427 | 3 | 2K | tRNA | G | 53 | G | 54 | 5MU | 55 | PSU | 56 | A | 59 | U | 61 | C | 62 | C | 63 | cWW | ncWW | tWH | ||
| 6 | HL_4TUE_218 | 4TUE | 0.2950 | 3 | QV | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 58 | U | 60 | C | 61 | C | 62 | cWW | ncWW | tWH | ||
| 7 | HL_4V9I_040 | 4V9I | 0.3642 | 3 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 58 | C | 60 | C | 61 | G | 62 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAAUCC | 2 |
| GGAUAAAAGAC | 1 |
| GGUUCGAUUCC | 1 |
| GG(5MU)(PSU)CAAAUCC | 1 |
| GGUUCAAAUCC | 1 |
| CAACUCUACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAAUC | 2 |
| GAUAAAAGA | 1 |
| GUUCGAUUC | 1 |
| G(5MU)(PSU)CAAAUC | 1 |
| GUUCAAAUC | 1 |
| AACUCUACC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.26 | Avg 0.42 | Max 0.92
Coloring options: