3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGGCAACG
Length
8 nucleotides
Bulged bases
4V8C|1|DA|C|1267
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_247 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.2924
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_45359.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

4V8C|1|DA|C|1264
4V8C|1|DA|G|1265
4V8C|1|DA|G|1266
4V8C|1|DA|C|1267
4V8C|1|DA|A|1268
4V8C|1|DA|A|1269
4V8C|1|DA|C|1270
4V8C|1|DA|G|1271

Current chains

Chain DA
16S ribosomal RNA

Nearby chains

Chain DP
30S RIBOSOMAL PROTEIN S13
Chain DV
30S RIBOSOMAL PROTEIN S19
Chain DX
30S RIBOSOMAL PROTEIN THX

Coloring options:


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