HL_4V8C_258
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAUUGGUAGAC
- Length
- 13 nucleotides
- Bulged bases
- 4V8C|1|DB|U|16, 4V8C|1|DB|U|17, 4V8C|1|DB|G|18, 4V8C|1|DB|G|19, 4V8C|1|DB|U|20, 4V8C|1|DB|G|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8C_258 not in the Motif Atlas
- Geometric match to HL_4V87_252
- Geometric discrepancy: 0.252
- The information below is about HL_4V87_252
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.2
- Basepair signature
- cWW-cWS-tHS-F
- Number of instances in this motif group
- 7
Unit IDs
4V8C|1|DB|G|12
4V8C|1|DB|G|13
4V8C|1|DB|A|14
4V8C|1|DB|A|15
4V8C|1|DB|U|16
4V8C|1|DB|U|17
4V8C|1|DB|G|18
4V8C|1|DB|G|19
4V8C|1|DB|U|20
4V8C|1|DB|A|21
4V8C|1|DB|G|22
4V8C|1|DB|A|23
4V8C|1|DB|C|24
Current chains
- Chain DB
- TRNA-LEU
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DC
- Transfer RNA; tRNA
Coloring options: