HL_4V8C_258

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

4V8C|1|DB|U|16, 4V8C|1|DB|U|17, 4V8C|1|DB|G|18, 4V8C|1|DB|G|19, 4V8C|1|DB|U|20, 4V8C|1|DB|G|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_258 not in the Motif Atlas

Geometric match to HL_4V87_252

Geometric discrepancy: 0.252

The information below is about HL_4V87_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.2

Basepair signature

cWW-cWS-tHS-F

Number of instances in this motif group

7

Unit IDs

4V8C|1|DB|G|12
4V8C|1|DB|G|13
4V8C|1|DB|A|14
4V8C|1|DB|A|15
4V8C|1|DB|U|16
4V8C|1|DB|U|17
4V8C|1|DB|G|18
4V8C|1|DB|G|19
4V8C|1|DB|U|20
4V8C|1|DB|A|21
4V8C|1|DB|G|22
4V8C|1|DB|A|23
4V8C|1|DB|C|24

Current chains

Chain DB

TRNA-LEU

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

Transfer RNA; tRNA