3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAAUUGGUAGAC
Length
13 nucleotides
Bulged bases
4V8C|1|DB|U|16, 4V8C|1|DB|U|17, 4V8C|1|DB|G|18, 4V8C|1|DB|G|19, 4V8C|1|DB|U|20, 4V8C|1|DB|G|22
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_258 not in the Motif Atlas
Geometric match to HL_4V87_252
Geometric discrepancy: 0.252
The information below is about HL_4V87_252
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40252.2
Basepair signature
cWW-cWS-tHS-F
Number of instances in this motif group
7

Unit IDs

4V8C|1|DB|G|12
4V8C|1|DB|G|13
4V8C|1|DB|A|14
4V8C|1|DB|A|15
4V8C|1|DB|U|16
4V8C|1|DB|U|17
4V8C|1|DB|G|18
4V8C|1|DB|G|19
4V8C|1|DB|U|20
4V8C|1|DB|A|21
4V8C|1|DB|G|22
4V8C|1|DB|A|23
4V8C|1|DB|C|24

Current chains

Chain DB
TRNA-LEU

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain DC
Transfer RNA; tRNA

Coloring options:


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