Motif HL_40252.2 Version HL_40252.2 of this group appears in releases 3.89 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	3-5
1	HL_4V87_252	4V87	0.5525	6	BB	tRNA	G	12	G	13	A	14	A	15	A	21	A	23	C	24	ncWW		ncwW
2	HL_1SER_001	1SER	0.2511	6	T	tRNA	C	12	G	13	A	14	G	15	A	21	A	22	G	23	cWW	tSH
3	HL_8JOZ_001	8JOZ	0.2823	6	B	tRNA	C	12	G	13	A	14	G	15	A	21	A	22	G	23	cWW	tSH	cWS
4	HL_4JYZ_001	4JYZ	0.1044	4	B	tRNA	C	912	A	913	A	914	G	915	A	921	A	922	G	923	cWW	tSH	cWS
5	HL_4JXZ_001	4JXZ	0.0000	4	B	tRNA	C	912	A	913	A	914	G	915	A	921	A	922	G	923	cWW	tSH	cWS
6	HL_1F7U_001	1F7U	0.2428	5	B	TRNA(ARG)	C	912	C	913	A	914	A	915	A	921	C	922	G	923	cWW	ncWB	cWS
7	HL_1QTQ_001	1QTQ	0.5405	4	B	tRNA	C	912	A	913	A	914	G	915	A	921	A	922	G	923	cWW	tSH	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGCGGUAAG	2
GGAAUUGGUAGAC	1
CGAGUGGCGAAG	1
CGAGCGGAAG	1
CAAGCGAAG	1
CCAAGGCACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGCGGUAA	2
GAAUUGGUAGA	1
GAGUGGC(H2U)GAA	1
GAGC(OMG)G(H2U)(H2U)GAA	1
AAGC(OMG)G(H2U)AA	1
CAA(H2U)GG(H2U)CAC	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94	3.95
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWS-tHS-F
Heat map statistics: Min 0.10 | Avg 0.36 | Max 0.73

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Coloring options: Nucleotide numbers

Motif HL_40252.2 Version HL_40252.2 of this group appears in releases 3.89 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_40252.2 Version HL_40252.2 of this group appears in releases 3.89 to 3.95

Download

Csv

Json