Motif HL_40252.2 Version HL_40252.2 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QTQ_001 | 1QTQ | 0.5405 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
| 2 | HL_1F7U_001 | 1F7U | 0.2428 | 5 | B | TRNA(ARG) | C | 912 | C | 913 | A | 914 | A | 915 | A | 921 | C | 922 | G | 923 | cWW | ncWB | cWS |
| 3 | HL_4JXZ_001 | 4JXZ | 0.0000 | 4 | B | RNA (71-MER) | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
| 4 | HL_4JYZ_001 | 4JYZ | 0.1044 | 4 | B | tRNA | C | 912 | A | 913 | A | 914 | G | 915 | A | 921 | A | 922 | G | 923 | cWW | tSH | cWS |
| 5 | HL_8JOZ_001 | 8JOZ | 0.2823 | 6 | B | tRNA | C | 12 | G | 13 | A | 14 | G | 15 | A | 21 | A | 22 | G | 23 | cWW | tSH | cWS |
| 6 | HL_1SER_001 | 1SER | 0.2511 | 6 | T | tRNA | C | 12 | G | 13 | A | 14 | G | 15 | A | 21 | A | 22 | G | 23 | cWW | tSH | |
| 7 | HL_4V87_252 | 4V87 | 0.5525 | 6 | BB | TRNA-LEU | G | 12 | G | 13 | A | 14 | A | 15 | A | 21 | A | 23 | C | 24 | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGCGGUAAG | 2 |
| CCAAGGCACG | 1 |
| CAAGCGAAG | 1 |
| CGAGCGGAAG | 1 |
| CGAGUGGCGAAG | 1 |
| GGAAUUGGUAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCGGUAA | 2 |
| CAA(H2U)GG(H2U)CAC | 1 |
| AAGC(OMG)G(H2U)AA | 1 |
| GAGC(OMG)G(H2U)(H2U)GAA | 1 |
| GAGUGGC(H2U)GAA | 1 |
| GAAUUGGUAGA | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWS-tHS-F
- Heat map statistics
- Min 0.10 | Avg 0.36 | Max 0.73
Coloring options: