HL_4V8D_037

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

4V8D|1|AC|G|19, 4V8D|1|AC|G|20, 4V8D|1|AC|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_037 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1307

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

4V8D|1|AC|C|13
4V8D|1|AC|A|14
4V8D|1|AC|G|15
4V8D|1|AC|C|16
4V8D|1|AC|C|17
4V8D|1|AC|C|18
4V8D|1|AC|G|19
4V8D|1|AC|G|20
4V8D|1|AC|U|21
4V8D|1|AC|A|22
4V8D|1|AC|G|23

Current chains

Chain AC

TRNA-FMET

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5