HL_4V8D_097

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V8D|1|BA|G|2210, 4V8D|1|BA|G|2211, 4V8D|1|BA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_097 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.4903

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V8D|1|BA|C|2209
4V8D|1|BA|G|2210
4V8D|1|BA|G|2211
4V8D|1|BA|A|2212
4V8D|1|BA|U|2213
4V8D|1|BA|G|2215

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BK

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28