HL_4V8D_112

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V8D|1|BA|U|2797, 4V8D|1|BA|C|2798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8D_112 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1634

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8D|1|BA|C|2794
4V8D|1|BA|G|2795
4V8D|1|BA|U|2797
4V8D|1|BA|C|2798
4V8D|1|BA|A|2799
4V8D|1|BA|A|2801
4V8D|1|BA|G|2802

Current chains

Chain BA

RNA (2912-MER)

Nearby chains