HL_4V8D_155
3D structure
- PDB id
- 4V8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8D_155 not in the Motif Atlas
- Homologous match to HL_5HR7_006
- Geometric discrepancy: 0.1051
- The information below is about HL_5HR7_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V8D|1|CC|G|54
4V8D|1|CC|U|55
4V8D|1|CC|U|56
4V8D|1|CC|C|57
4V8D|1|CC|A|58
4V8D|1|CC|A|59
4V8D|1|CC|A|60
4V8D|1|CC|U|61
4V8D|1|CC|C|62
Current chains
- Chain CC
- TRNA-FMET
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S ribosomal protein L5
- Chain DP
- 50S ribosomal protein L16
Coloring options: