HL_4V8E_055

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V8E|1|AA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_055 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0798

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|AA|C|2248
4V8E|1|AA|U|2249
4V8E|1|AA|G|2250
4V8E|1|AA|G|2251
4V8E|1|AA|G|2252
4V8E|1|AA|G|2253
4V8E|1|AA|C|2254
4V8E|1|AA|G|2255
4V8E|1|AA|G|2256

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A3

50S ribosomal protein L27

Chain AP

50S ribosomal protein L16

Chain BC

Transfer RNA; tRNA