4V8E Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8E_001 | 1/AA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V8E_002 | 1/AA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V8E_003 | 1/AA/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_4V8E_004 | 1/AA/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V8E_005 | 1/AA/155:171 | GNRA | homologous HL_7A0S_005 HL_37824.8 | |
| HL_4V8E_006 | 1/AA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V8E_007 | 1/AA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V8E_008 | 1/AA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V8E_009 | 1/AA/270J:270P | No text annotation | geometric HL_8P9A_231 HL_13189.1 | |
| HL_4V8E_010 | 1/AA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V8E_011 | 1/AA/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4V8E_012 | 1/AA/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_4V8E_233 | 1/AA/383:391 | No text annotation | ||
| HL_4V8E_014 | 1/AA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V8E_015 | 1/AA/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.8 | |
| HL_4V8E_016 | 1/AA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V8E_017 | 1/AA/544:549 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_4V8E_018 | 1/AA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V8E_019 | 1/AA/611:617 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_4V8E_020 | 1/AA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V8E_021 | 1/AA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V8E_023 | 1/AA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V8E_024 | 1/AA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V8E_025 | 1/AA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V8E_026 | 1/AA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4V8E_234 | 1/AA/875:902 | No text annotation | ||
| HL_4V8E_027 | 1/AA/880:897 | No text annotation | ||
| HL_4V8E_028 | 1/AA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V8E_029 | 1/AA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V8E_030 | 1/AA/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V8E_031 | 1/AA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V8E_032 | 1/AA/1171:1178 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V8E_033 | 1/AA/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V8E_034 | 1/AA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V8E_035 | 1/AA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V8E_036 | 1/AA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V8E_037 | 1/AA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V8E_038 | 1/AA/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4V8E_039 | 1/AA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V8E_040 | 1/AA/1533:1538 | No text annotation | ||
| HL_4V8E_041 | 1/AA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V8E_042 | 1/AA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V8E_043 | 1/AA/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V8E_044 | 1/AA/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_4V8E_045 | 1/AA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V8E_046 | 1/AA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V8E_047 | 1/AA/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V8E_048 | 1/AA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V8E_049 | 1/AA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V8E_050 | 1/AA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V8E_051 | 1/AA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V8E_052 | 1/AA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V8E_053 | 1/AA/2143:2148 | UNCG | homologous HL_3U4M_001 HL_34617.5 | |
| HL_4V8E_054 | 1/AA/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4V8E_055 | 1/AA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V8E_056 | 1/AA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V8E_057 | 1/AA/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_4V8E_058 | 1/AA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V8E_059 | 1/AA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V8E_060 | 1/AA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V8E_061 | 1/AA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V8E_062 | 1/AA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V8E_063 | 1/AA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V8E_064 | 1/AA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V8E_065 | 1/AA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V8E_066 | 1/AA/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.8 | |
| HL_4V8E_067 | 1/AA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V8E_068 | 1/AA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V8E_069 | 1/AA/2794:2802 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V8E_070 | 1/AA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V8E_071 | 1/AA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V8E_236 | 1/AB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V8E_072 | 1/AB/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_4V8E_073 | 1/AB/86:90 | GNRA | homologous HL_4V9F_072 HL_37824.8 | |
| HL_4V8E_074 | 1/BA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V8E_076 | 1/BA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4V8E_237 | 1/BA/186:191 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4V8E_250 | 1/BA/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_4V8E_079 | 1/BA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V8E_080 | 1/BA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4V8E_081 | 1/BA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V8E_082 | 1/BA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V8E_083 | 1/BA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V8E_084 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V8E_085 | 1/BA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4V8E_086 | 1/BA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V8E_087 | 1/BA/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_4V8E_088 | 1/BA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V8E_089 | 1/BA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4V8E_090 | 1/BA/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_4V8E_251 | 1/BA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V8E_092 | 1/BA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4V8E_093 | 1/BA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V8E_094 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V8E_095 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V8E_096 | 1/BA/1028A:1032B | No text annotation | ||
| HL_4V8E_097 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4V8E_098 | 1/BA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V8E_099 | 1/BA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V8E_100 | 1/BA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V8E_101 | 1/BA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4V8E_102 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V8E_103 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V8E_104 | 1/BA/1449:1454 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_4V8E_105 | 1/BA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4V8E_239 | 1/BB/12:24 | No text annotation | geometric HL_1F7U_001 HL_40252.4 | |
| HL_4V8E_107 | 1/BB/32:40 | tRNA anticodon loop | geometric HL_5IBB_210 HL_06059.7 | |
| HL_4V8E_109 | 1/BB/62:70 | T-loop with 2 stacked bulged bases | geometric HL_1QTQ_003 HL_28252.9 | |
| HL_4V8E_110 | 1/BC/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_4V8E_111 | 1/BC/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_4V8E_112 | 1/BC/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_28252.9 | |
| HL_4V8E_113 | 1/BD/12:24 | No text annotation | geometric HL_4JXZ_001 NA | |
| HL_4V8E_114 | 1/BD/32:40 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4V8E_116 | 1/BD/62:70 | T-loop with 2 stacked bulged bases | geometric HL_1N78_003 HL_28252.9 | |
| HL_4V8E_117 | 1/CA/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V8E_118 | 1/CA/86:94 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V8E_119 | 1/CA/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4V8E_120 | 1/CA/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V8E_122 | 1/CA/184:191 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V8E_123 | 1/CA/215:220 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V8E_124 | 1/CA/236:242 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V8E_125 | 1/CA/271:274 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V8E_126 | 1/CA/330:337 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V8E_127 | 1/CA/344:348 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4V8E_128 | 1/CA/352:360 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V8E_242 | 1/CA/411:419 | No text annotation | ||
| HL_4V8E_130 | 1/CA/438:445 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V8E_131 | 1/CA/489:494 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V8E_132 | 1/CA/514:519 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4V8E_133 | 1/CA/569:574 | GNRA | geometric HL_5TBW_017 NA | |
| HL_4V8E_134 | 1/CA/590:599 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V8E_135 | 1/CA/636:642 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V8E_136 | 1/CA/655:660 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V8E_137 | 1/CA/667:673 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_4V8E_138 | 1/CA/687:694 | No text annotation | ||
| HL_4V8E_139 | 1/CA/760:767 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V8E_140 | 1/CA/792:801 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V8E_141 | 1/CA/827:833 | GNRA related | geometric HL_2NUE_001 HL_53890.2 | |
| HL_4V8E_142 | 1/CA/874:879 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_4V8E_143 | 1/CA/932:939 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_4V8E_144 | 1/CA/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V8E_145 | 1/CA/1025:1032 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V8E_146 | 1/CA/1111:1121 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V8E_147 | 1/CA/1139:1146 | No text annotation | ||
| HL_4V8E_148 | 1/CA/1218:1224 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V8E_149 | 1/CA/1269:1274 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V8E_150 | 1/CA/1328:1336 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V8E_151 | 1/CA/1371:1377 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V8E_152 | 1/CA/1410:1415 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_4V8E_153 | 1/CA/1436:1445 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V8E_154 | 1/CA/1500:1507 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4V8E_155 | 1/CA/1539:1545 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V8E_156 | 1/CA/1580:1585 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4V8E_157 | 1/CA/1613:1616 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V8E_158 | 1/CA/1659:1666 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_4V8E_159 | 1/CA/1678:1683 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V8E_160 | 1/CA/1739:1744 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4V8E_161 | 1/CA/1766:1772 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V8E_162 | 1/CA/1784:1788 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V8E_163 | 1/CA/1809:1819 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V8E_164 | 1/CA/1838:1843 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V8E_165 | 1/CA/1896:1901 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V8E_166 | 1/CA/1933:1943 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V8E_167 | 1/CA/1972:1980 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4V8E_168 | 1/CA/2050:2059 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V8E_169 | 1/CA/2166:2171 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4V8E_170 | 1/CA/2227:2232 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4V8E_171 | 1/CA/2261:2269 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V8E_172 | 1/CA/2277:2289 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V8E_252 | 1/CA/2316:2326 | No text annotation | ||
| HL_4V8E_174 | 1/CA/2337:2344 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V8E_175 | 1/CA/2368:2375 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V8E_176 | 1/CA/2387:2392 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V8E_177 | 1/CA/2417:2426 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V8E_178 | 1/CA/2484:2492 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V8E_179 | 1/CA/2541:2548 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V8E_180 | 1/CA/2564:2570 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V8E_181 | 1/CA/2607:2612 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V8E_182 | 1/CA/2671:2676 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_4V8E_183 | 1/CA/2714:2719 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V8E_184 | 1/CA/2759:2773 | No text annotation | homologous HL_7A0S_065 HL_74055.2 | |
| HL_4V8E_185 | 1/CA/2808:2814 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V8E_186 | 1/CA/2830:2838 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V8E_187 | 1/CA/2867:2872 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V8E_244 | 1/CB/36:50 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V8E_188 | 1/CB/40:46 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V8E_189 | 1/CB/88:93 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_4V8E_190 | 1/DA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V8E_253 | 1/DA/82:87 | No text annotation | ||
| HL_4V8E_192 | 1/DA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4V8E_254 | 1/DA/186F:191A | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4V8E_194 | 1/DA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4V8E_195 | 1/DA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V8E_196 | 1/DA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4V8E_197 | 1/DA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V8E_198 | 1/DA/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_4V8E_199 | 1/DA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V8E_200 | 1/DA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V8E_201 | 1/DA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4V8E_202 | 1/DA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4V8E_203 | 1/DA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V8E_204 | 1/DA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V8E_205 | 1/DA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4V8E_206 | 1/DA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V8E_207 | 1/DA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V8E_208 | 1/DA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4V8E_209 | 1/DA/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.8 | |
| HL_4V8E_210 | 1/DA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V8E_211 | 1/DA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V8E_213 | 1/DA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_4V8E_214 | 1/DA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V8E_215 | 1/DA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V8E_216 | 1/DA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V8E_217 | 1/DA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4V8E_218 | 1/DA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_6CZR_100 NA | |
| HL_4V8E_219 | 1/DA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V8E_220 | 1/DA/1449:1454 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_4V8E_221 | 1/DA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4V8E_247 | 1/DB/12:24 | No text annotation | ||
| HL_4V8E_223 | 1/DB/32:40 | tRNA anticodon loop | geometric HL_7U2I_104 HL_06059.7 | |
| HL_4V8E_225 | 1/DB/62:70 | T-loop with 2 stacked bulged bases | geometric HL_1QTQ_003 HL_28252.9 | |
| HL_4V8E_226 | 1/DC/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_4V8E_227 | 1/DC/32:40 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.7 | |
| HL_4V8E_228 | 1/DC/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_28252.9 | |
| HL_4V8E_229 | 1/DD/12:24 | No text annotation | geometric HL_4JXZ_001 NA | |
| HL_4V8E_230 | 1/DD/32:40 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4V8E_231 | 1/DD/48:52 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_4V8E_232 | 1/DD/62:70 | T-loop with 2 stacked bulged bases | geometric HL_1N78_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8E_013 | No text annotation | ||
| HL_4V8E_249 | No text annotation | ||
| HL_4V8E_022 | No text annotation | ||
| HL_4V8E_235 | No text annotation | ||
| HL_4V8E_075 | No text annotation | ||
| HL_4V8E_077 | No text annotation | ||
| HL_4V8E_078 | No text annotation | ||
| HL_4V8E_238 | No text annotation | ||
| HL_4V8E_091 | No text annotation | ||
| HL_4V8E_106 | No text annotation | ||
| HL_4V8E_240 | No text annotation | ||
| HL_4V8E_108 | No text annotation | ||
| HL_4V8E_115 | No text annotation | ||
| HL_4V8E_241 | No text annotation | ||
| HL_4V8E_121 | No text annotation | ||
| HL_4V8E_129 | No text annotation | ||
| HL_4V8E_243 | No text annotation | ||
| HL_4V8E_173 | No text annotation | ||
| HL_4V8E_191 | No text annotation | ||
| HL_4V8E_245 | No text annotation | ||
| HL_4V8E_246 | No text annotation | ||
| HL_4V8E_193 | No text annotation | ||
| HL_4V8E_212 | No text annotation | ||
| HL_4V8E_222 | No text annotation | ||
| HL_4V8E_224 | No text annotation | ||
| HL_4V8E_248 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8E_002 | 1/AA/24:30, 1/AA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V8E_003 | 1/AA/36:37, 1/AA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V8E_392 | 1/AA/43:44, 1/AA/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_4V8E_005 | 1/AA/81:85, 1/AA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V8E_006 | 1/AA/183:184, 1/AA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V8E_007 | 1/AA/188:194, 1/AA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V8E_008 | 1/AA/239:245, 1/AA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V8E_370 | 1/AA/273:273, 1/AA/363:364 | Major groove platform | homologous IL_9DFE_008 IL_48076.6 | |
| IL_4V8E_011 | 1/AA/273F:279, 1/AA/361:363 | No text annotation | ||
| IL_4V8E_012 | 1/AA/280:284, 1/AA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V8E_013 | 1/AA/288:290, 1/AA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V8E_014 | 1/AA/293:295, 1/AA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V8E_015 | 1/AA/481:484, 1/AA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V8E_016 | 1/AA/564:566, 1/AA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V8E_017 | 1/AA/606:609A, 1/AA/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V8E_018 | 1/AA/672:674, 1/AA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V8E_019 | 1/AA/674:678, 1/AA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V8E_020 | 1/AA/697:698, 1/AA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V8E_021 | 1/AA/702:703, 1/AA/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4V8E_022 | 1/AA/703:707, 1/AA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V8E_023 | 1/AA/738:741, 1/AA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V8E_024 | 1/AA/775:777, 1/AA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V8E_025 | 1/AA/837:838, 1/AA/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4V8E_026 | 1/AA/844:846, 1/AA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V8E_027 | 1/AA/846:850, 1/AA/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V8E_028 | 1/AA/858:862, 1/AA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V8E_029 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_4V8E_030 | 1/AA/864:868, 1/AA/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4V8E_032 | 1/AA/875:880, 1/AA/897:902 | No text annotation | ||
| IL_4V8E_033 | 1/AA/952:954, 1/AA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V8E_034 | 1/AA/994:996, 1/AA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V8E_035 | 1/AA/998:1002, 1/AA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V8E_036 | 1/AA/1004:1011, 1/AA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V8E_037 | 1/AA/1011:1013, 1/AA/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4V8E_038 | 1/AA/1018:1024, 1/AA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V8E_039 | 1/AA/1024:1030, 1/AA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V8E_040 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V8E_041 | 1/AA/1043:1051, 1/AA/1108:1112 | Kink-turn | homologous IL_7RQB_042 NA | |
| IL_4V8E_393 | 1/AA/1059:1062, 1/AA/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_4V8E_043 | 1/AA/1087:1091, 1/AA/1100:1102 | Isolated cWH basepair | geometric IL_6F4H_001 NA | |
| IL_4V8E_045 | 1/AA/1196:1198, 1/AA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V8E_046 | 1/AA/1202:1206, 1/AA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V8E_047 | 1/AA/1208:1215, 1/AA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V8E_048 | 1/AA/1219:1221, 1/AA/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V8E_049 | 1/AA/1262:1269, 1/AA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V8E_050 | 1/AA/1310:1313, 1/AA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V8E_051 | 1/AA/1319:1323, 1/AA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V8E_052 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V8E_053 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V8E_054 | 1/AA/1415:1416, 1/AA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V8E_055 | 1/AA/1417:1421, 1/AA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4V8E_056 | 1/AA/1433:1435, 1/AA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_4V8E_057 | 1/AA/1437:1440, 1/AA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V8E_058 | 1/AA/1448:1449A, 1/AA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V8E_059 | 1/AA/1450:1451, 1/AA/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4V8E_060 | 1/AA/1469:1473, 1/AA/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V8E_061 | 1/AA/1482:1483, 1/AA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V8E_062 | 1/AA/1489:1491, 1/AA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V8E_063 | 1/AA/1526:1530, 1/AA/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V8E_064 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V8E_065 | 1/AA/1663:1665, 1/AA/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4V8E_066 | 1/AA/1666:1669, 1/AA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V8E_374 | 1/AA/1666:1674, 1/AA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V8E_067 | 1/AA/1669:1674, 1/AA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V8E_068 | 1/AA/1686:1691, 1/AA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V8E_069 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V8E_070 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V8E_071 | 1/AA/1837:1840, 1/AA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_4V8E_072 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V8E_073 | 1/AA/1846:1849, 1/AA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V8E_074 | 1/AA/1851:1855, 1/AA/1887:1891 | UAA/GAN with extra pair | homologous IL_7A0S_069 IL_89021.2 | |
| IL_4V8E_075 | 1/AA/1856:1860, 1/AA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V8E_076 | 1/AA/1933:1934, 1/AA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_4V8E_077 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4V8E_078 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V8E_079 | 1/AA/2054:2057, 1/AA/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_4V8E_080 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V8E_081 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_4V8E_082 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V8E_083 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V8E_084 | 1/AA/2108:2110, 1/AA/2179:2181 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_4V8E_085 | 1/AA/2110:2120, 1/AA/2178:2179 | No text annotation | ||
| IL_4V8E_086 | 1/AA/2124:2127, 1/AA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V8E_087 | 1/AA/2129:2136, 1/AA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V8E_376 | 1/AA/2129:2137, 1/AA/2154:2159 | No text annotation | ||
| IL_4V8E_089 | 1/AA/2297:2299, 1/AA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4V8E_090 | 1/AA/2350:2353, 1/AA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V8E_091 | 1/AA/2401:2403, 1/AA/2414:2415 | Multiple bulged bases | geometric IL_3MXH_004 IL_82107.5 | |
| IL_4V8E_092 | 1/AA/2453:2454, 1/AA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V8E_093 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V8E_094 | 1/AA/2457:2459, 1/AA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_4V8E_095 | 1/AA/2459:2461, 1/AA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V8E_096 | 1/AA/2466:2470, 1/AA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V8E_097 | 1/AA/2507:2508, 1/AA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V8E_098 | 1/AA/2510:2512, 1/AA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V8E_099 | 1/AA/2512:2513, 1/AA/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_4V8E_100 | 1/AA/2522:2523, 1/AA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V8E_101 | 1/AA/2591:2592, 1/AA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V8E_102 | 1/AA/2636:2640, 1/AA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V8E_103 | 1/AA/2652:2658, 1/AA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V8E_104 | 1/AA/2680:2684, 1/AA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V8E_105 | 1/AA/2687:2691, 1/AA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V8E_106 | 1/AA/2695:2696, 1/AA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V8E_107 | 1/AA/2737:2742, 1/AA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V8E_108 | 1/AA/2838:2839, 1/AA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V8E_109 | 1/AA/2843:2846, 1/AA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V8E_110 | 1/AA/2847:2852, 1/AA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V8E_111 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V8E_112 | 1/AB/23:28, 1/AB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V8E_113 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V8E_114 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4V8E_115 | 1/AB/71:79, 1/AB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V8E_117 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4V8E_118 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V8E_119 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V8E_120 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_4V8E_121 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_4V8E_122 | 1/BA/67:69, 1/BA/99:102 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_4V8E_126 | 1/BA/129:131, 1/BA/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_4V8E_127 | 1/BA/132:136, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V8E_128 | 1/BA/148:153, 1/BA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V8E_377 | 1/BA/186:186, 1/BA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V8E_131 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V8E_132 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V8E_133 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V8E_134 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V8E_394 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V8E_136 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4V8E_137 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V8E_138 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_4V8E_139 | 1/BA/450:455, 1/BA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4V8E_140 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V8E_141 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V8E_142 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V8E_143 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V8E_144 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V8E_378 | 1/BA/594:597, 1/BA/643:645 | No text annotation | homologous IL_6CZR_136 NA | |
| IL_4V8E_145 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V8E_146 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V8E_147 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V8E_148 | 1/BA/657:658, 1/BA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V8E_149 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V8E_379 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V8E_151 | 1/BA/683:688, 1/BA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V8E_152 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V8E_153 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V8E_154 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V8E_155 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4V8E_156 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4V8E_157 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V8E_158 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V8E_159 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_4V8E_395 | 1/BA/1025:1027, 1/BA/1034:1036 | No text annotation | ||
| IL_4V8E_161 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V8E_162 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V8E_163 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V8E_164 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V8E_165 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V8E_167 | 1/BA/1124:1132, 1/BA/1142:1149 | No text annotation | ||
| IL_4V8E_168 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V8E_169 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V8E_170 | 1/BA/1259:1260, 1/BA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4V8E_380 | 1/BA/1259:1262, 1/BA/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4V8E_171 | 1/BA/1260:1262, 1/BA/1273:1274 | Minor groove platform | geometric IL_4LFB_054 IL_51454.3 | |
| IL_4V8E_173 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V8E_174 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V8E_175 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V8E_176 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_005 NA | |
| IL_4V8E_177 | 1/BA/1407:1409, 1/BA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V8E_178 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V8E_179 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V8E_180 | 1/BA/1431:1435, 1/BA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4V8E_181 | 1/BA/1435:1437, 1/BA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4V8E_182 | 1/BA/1440:1447, 1/BA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V8E_185 | 1/CA/24:30, 1/CA/536:542 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V8E_186 | 1/CA/36:37, 1/CA/469:471 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_4V8E_396 | 1/CA/42:43, 1/CA/462:464 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_4V8E_188 | 1/CA/80:84, 1/CA/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V8E_189 | 1/CA/173:174, 1/CA/202:204 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V8E_190 | 1/CA/178:184, 1/CA/191:198 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V8E_191 | 1/CA/229:235, 1/CA/243:248 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V8E_192 | 1/CA/270:271, 1/CA/274:276 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4V8E_193 | 1/CA/292:293, 1/CA/393:395 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V8E_397 | 1/CA/298:304, 1/CA/386:388 | No text annotation | ||
| IL_4V8E_195 | 1/CA/305:309, 1/CA/382:385 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_4V8E_196 | 1/CA/313:315, 1/CA/375:378 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V8E_197 | 1/CA/318:320, 1/CA/368:372 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V8E_199 | 1/CA/508:511, 1/CA/522:535 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V8E_200 | 1/CA/588:590, 1/CA/599:601 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_4V8E_201 | 1/CA/630:634, 1/CA/644:648 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V8E_203 | 1/CA/720:722, 1/CA/854:856 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V8E_204 | 1/CA/722:726, 1/CA/847:854 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V8E_205 | 1/CA/745:746, 1/CA/811:813 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V8E_206 | 1/CA/750:751, 1/CA/776:778 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V8E_207 | 1/CA/751:755, 1/CA/772:776 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V8E_208 | 1/CA/786:789, 1/CA/804:806 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V8E_209 | 1/CA/823:825, 1/CA/835:839 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V8E_210 | 1/CA/885:886, 1/CA/986:988 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4V8E_211 | 1/CA/892:894, 1/CA/977:980 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V8E_381 | 1/CA/892:898, 1/CA/974:980 | No text annotation | ||
| IL_4V8E_212 | 1/CA/894:898, 1/CA/974:977 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V8E_214 | 1/CA/906:910, 1/CA/962:966 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V8E_215 | 1/CA/910:911, 1/CA/960:962 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_4V8E_216 | 1/CA/912:916, 1/CA/956:959 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4V8E_217 | 1/CA/923:927, 1/CA/945:949 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V8E_398 | 1/CA/923:929, 1/CA/942:949 | No text annotation | ||
| IL_4V8E_218 | 1/CA/927:930, 1/CA/941:945 | No text annotation | ||
| IL_4V8E_219 | 1/CA/998:1000, 1/CA/1009:1011 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V8E_220 | 1/CA/1041:1043, 1/CA/1206:1207 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V8E_221 | 1/CA/1045:1049, 1/CA/1200:1204 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_4V8E_222 | 1/CA/1051:1058, 1/CA/1197:1198 | SSU/LSU pseudoknot | geometric IL_8VTW_036 NA | |
| IL_4V8E_384 | 1/CA/1051:1060, 1/CA/1196:1198 | No text annotation | ||
| IL_4V8E_223 | 1/CA/1058:1060, 1/CA/1196:1197 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_4V8E_224 | 1/CA/1065:1071, 1/CA/1186:1191 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V8E_225 | 1/CA/1071:1077, 1/CA/1171:1186 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V8E_226 | 1/CA/1078:1081, 1/CA/1168:1170 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V8E_227 | 1/CA/1090:1098, 1/CA/1155:1159 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
| IL_4V8E_228 | 1/CA/1106:1109, 1/CA/1123:1126 | No text annotation | geometric IL_1MMS_001 IL_92446.2 | |
| IL_4V8E_229 | 1/CA/1134:1138, 1/CA/1147:1149 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_07785.1 | |
| IL_4V8E_231 | 1/CA/1242:1244, 1/CA/1294:1297 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V8E_232 | 1/CA/1248:1252, 1/CA/1287:1290 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V8E_233 | 1/CA/1254:1261, 1/CA/1281:1285 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V8E_234 | 1/CA/1265:1267, 1/CA/1276:1277 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V8E_235 | 1/CA/1309:1316, 1/CA/2034:2040 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V8E_236 | 1/CA/1357:1360, 1/CA/1650:1651 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V8E_237 | 1/CA/1366:1370, 1/CA/1378:1380 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V8E_238 | 1/CA/1398:1402, 1/CA/1423:1427 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V8E_239 | 1/CA/1404:1408, 1/CA/1417:1421 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V8E_240 | 1/CA/1462:1463, 1/CA/1630:1634 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V8E_241 | 1/CA/1464:1468, 1/CA/1625:1629 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V8E_242 | 1/CA/1480:1482, 1/CA/1605:1608 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_4V8E_243 | 1/CA/1484:1487, 1/CA/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V8E_244 | 1/CA/1496:1498, 1/CA/1510:1511 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V8E_245 | 1/CA/1499:1500, 1/CA/1507:1509 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4V8E_246 | 1/CA/1517:1521, 1/CA/1567:1570 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V8E_399 | 1/CA/1529:1530, 1/CA/1553:1559 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_4V8E_248 | 1/CA/1536:1538, 1/CA/1546:1547 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V8E_249 | 1/CA/1573:1577, 1/CA/1588:1594 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V8E_250 | 1/CA/1699:1704, 1/CA/2027:2029 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V8E_251 | 1/CA/1711:1713, 1/CA/2018:2020 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V8E_252 | 1/CA/1714:1717, 1/CA/2016:2017 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4V8E_387 | 1/CA/1714:1722, 1/CA/2013:2017 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V8E_253 | 1/CA/1717:1722, 1/CA/2013:2016 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V8E_254 | 1/CA/1734:1739, 1/CA/1744:1750 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V8E_255 | 1/CA/1802:1803, 1/CA/2003:2005 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V8E_256 | 1/CA/1830:1836, 1/CA/1845:1853 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V8E_257 | 1/CA/1869:1872, 1/CA/1925:1926 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4V8E_258 | 1/CA/1873:1874, 1/CA/1921:1924 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V8E_259 | 1/CA/1878:1881, 1/CA/1916:1917 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V8E_260 | 1/CA/1883:1887, 1/CA/1910:1914 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4V8E_261 | 1/CA/1888:1892, 1/CA/1905:1909 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V8E_262 | 1/CA/1956:1957, 1/CA/1987:1990 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_4V8E_263 | 1/CA/1957:1968, 1/CA/1984:1987 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_4V8E_264 | 1/CA/2073:2075, 1/CA/2630:2631 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V8E_265 | 1/CA/2077:2080, 1/CA/2624:2628 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_4V8E_266 | 1/CA/2090:2092, 1/CA/2455:2456 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V8E_267 | 1/CA/2093:2094, 1/CA/2451:2454 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_4V8E_268 | 1/CA/2104:2106, 1/CA/2249:2252 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V8E_269 | 1/CA/2108:2110, 1/CA/2245:2247 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V8E_271 | 1/CA/2131:2133, 1/CA/2202:2204 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_28037.2 | |
| IL_4V8E_272 | 1/CA/2133:2143, 1/CA/2201:2202 | Multiple bulged bases | geometric IL_1KXK_003 IL_42626.2 | |
| IL_4V8E_400 | 1/CA/2147:2150, 1/CA/2184:2197 | No text annotation | ||
| IL_4V8E_388 | 1/CA/2152:2159, 1/CA/2178:2182 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V8E_276 | 1/CA/2310:2312, 1/CA/2330:2334 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_61476.2 | |
| IL_4V8E_277 | 1/CA/2363:2366, 1/CA/2377:2380 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V8E_278 | 1/CA/2414:2416, 1/CA/2427:2428 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_4V8E_279 | 1/CA/2466:2467, 1/CA/2511:2513 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4V8E_280 | 1/CA/2467:2468, 1/CA/2509:2511 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_4V8E_281 | 1/CA/2470:2472, 1/CA/2506:2507 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_4V8E_282 | 1/CA/2472:2474, 1/CA/2502:2506 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V8E_283 | 1/CA/2479:2483, 1/CA/2493:2497 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_4V8E_284 | 1/CA/2520:2521, 1/CA/2593:2595 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V8E_285 | 1/CA/2523:2525, 1/CA/2587:2591 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V8E_286 | 1/CA/2525:2526, 1/CA/2584:2587 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_4V8E_287 | 1/CA/2535:2536, 1/CA/2553:2556 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V8E_288 | 1/CA/2604:2605, 1/CA/2614:2616 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_4V8E_289 | 1/CA/2649:2653, 1/CA/2788:2796 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V8E_290 | 1/CA/2665:2671, 1/CA/2676:2681 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V8E_291 | 1/CA/2693:2697, 1/CA/2739:2741 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V8E_293 | 1/CA/2700:2704, 1/CA/2732:2736 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4V8E_294 | 1/CA/2708:2709, 1/CA/2724:2728 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V8E_295 | 1/CA/2751:2756, 1/CA/2776:2781 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V8E_297 | 1/CA/2849:2850, 1/CA/2889:2891 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V8E_298 | 1/CA/2854:2857, 1/CA/2881:2885 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V8E_299 | 1/CA/2858:2863, 1/CA/2876:2880 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V8E_300 | 1/CB/19:20, 1/CB/67:69 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V8E_301 | 1/CB/25:30, 1/CB/58:62 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V8E_302 | 1/CB/32:33, 1/CB/53:56 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V8E_303 | 1/CB/36:40, 1/CB/46:50 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V8E_304 | 1/CB/73:81, 1/CB/100:108 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V8E_306 | 1/DA/30:32, 1/DA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4V8E_307 | 1/DA/44:45, 1/DA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V8E_308 | 1/DA/47:52, 1/DA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V8E_309 | 1/DA/54:56, 1/DA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V8E_310 | 1/DA/63:66, 1/DA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_4V8E_311 | 1/DA/67:69, 1/DA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V8E_312 | 1/DA/129:131, 1/DA/231:232 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V8E_313 | 1/DA/132:136, 1/DA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V8E_314 | 1/DA/148:153, 1/DA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V8E_389 | 1/DA/186:186, 1/DA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V8E_316 | 1/DA/242:247, 1/DA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V8E_317 | 1/DA/249:252, 1/DA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4V8E_318 | 1/DA/292:293, 1/DA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V8E_320 | 1/DA/367:369, 1/DA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_4V8E_321 | 1/DA/371:375, 1/DA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4V8E_322 | 1/DA/375:376, 1/DA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4V8E_401 | 1/DA/409:416, 1/DA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V8E_324 | 1/DA/446:450, 1/DA/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_4V8E_325 | 1/DA/450:455, 1/DA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V8E_326 | 1/DA/504:511, 1/DA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V8E_327 | 1/DA/515:521, 1/DA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V8E_328 | 1/DA/569:575, 1/DA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V8E_329 | 1/DA/580:584, 1/DA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V8E_330 | 1/DA/594:596, 1/DA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V8E_331 | 1/DA/597:598, 1/DA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V8E_332 | 1/DA/605:612, 1/DA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V8E_333 | 1/DA/654:655, 1/DA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V8E_334 | 1/DA/657:658, 1/DA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V8E_335 | 1/DA/662:666, 1/DA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V8E_390 | 1/DA/673:677, 1/DA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4V8E_337 | 1/DA/683:688, 1/DA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V8E_338 | 1/DA/774:778, 1/DA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V8E_339 | 1/DA/779:783, 1/DA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V8E_340 | 1/DA/887:894, 1/DA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V8E_341 | 1/DA/922:923, 1/DA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_4V8E_342 | 1/DA/925:927, 1/DA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_4V8E_343 | 1/DA/933:935, 1/DA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V8E_345 | 1/DA/953:954, 1/DA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V8E_347 | 1/DA/1025:1027, 1/DA/1034:1036 | No text annotation | ||
| IL_4V8E_348 | 1/DA/1048:1050, 1/DA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V8E_402 | 1/DA/1052:1056, 1/DA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V8E_350 | 1/DA/1057:1058, 1/DA/1199:1203 | Minor groove platform | geometric IL_4LFB_045 IL_95583.2 | |
| IL_4V8E_351 | 1/DA/1060:1061, 1/DA/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_4V8E_352 | 1/DA/1061:1063, 1/DA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4V8E_354 | 1/DA/1124:1132, 1/DA/1142:1149 | No text annotation | ||
| IL_4V8E_355 | 1/DA/1159:1161, 1/DA/1175:1177 | No text annotation | ||
| IL_4V8E_356 | 1/DA/1247:1253, 1/DA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V8E_357 | 1/DA/1255:1258, 1/DA/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_4V8E_358 | 1/DA/1259:1260, 1/DA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4V8E_391 | 1/DA/1259:1262, 1/DA/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4V8E_359 | 1/DA/1260:1262, 1/DA/1273:1274 | Minor groove platform | geometric IL_4UYK_001 IL_51454.3 | |
| IL_4V8E_360 | 1/DA/1303:1308, 1/DA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V8E_361 | 1/DA/1399:1401, 1/DA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V8E_362 | 1/DA/1401:1404, 1/DA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V8E_363 | 1/DA/1405:1407, 1/DA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 IL_28037.2 | |
| IL_4V8E_364 | 1/DA/1407:1409, 1/DA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V8E_365 | 1/DA/1412:1414, 1/DA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V8E_366 | 1/DA/1416:1419, 1/DA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V8E_367 | 1/DA/1431:1435, 1/DA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4V8E_368 | 1/DA/1435:1437, 1/DA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4V8E_369 | 1/DA/1440:1447, 1/DA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8E_001 | Isolated non-canonical cWW pair | ||
| IL_4V8E_004 | Major groove platform with extra cWW | ||
| IL_4V8E_009 | No text annotation | ||
| IL_4V8E_010 | Major groove platform with extra pair | ||
| IL_4V8E_371 | No text annotation | ||
| IL_4V8E_372 | No text annotation | ||
| IL_4V8E_031 | Isolated near basepair | ||
| IL_4V8E_042 | No text annotation | ||
| IL_4V8E_044 | No text annotation | ||
| IL_4V8E_373 | Isolated non-canonical cWW with bulges | ||
| IL_4V8E_375 | No text annotation | ||
| IL_4V8E_088 | Isolated non-canonical cWW pair | ||
| IL_4V8E_116 | Isolated non-canonical cWW pair | ||
| IL_4V8E_123 | Isolated non-canonical cWW pair | ||
| IL_4V8E_124 | Isolated non-canonical cWW pair | ||
| IL_4V8E_125 | No text annotation | ||
| IL_4V8E_129 | No text annotation | ||
| IL_4V8E_130 | Isolated non-canonical cWW pair | ||
| IL_4V8E_135 | No text annotation | ||
| IL_4V8E_150 | No text annotation | ||
| IL_4V8E_160 | No text annotation | ||
| IL_4V8E_166 | No text annotation | ||
| IL_4V8E_172 | Isolated non-canonical cWW pair | ||
| IL_4V8E_183 | Isolated non-canonical cWW pair | ||
| IL_4V8E_184 | No text annotation | ||
| IL_4V8E_187 | Major groove platform with extra cWW | ||
| IL_4V8E_194 | No text annotation | ||
| IL_4V8E_198 | No text annotation | ||
| IL_4V8E_202 | Isolated non-canonical cWW pair | ||
| IL_4V8E_213 | Isolated non-canonical cWW pair | ||
| IL_4V8E_382 | No text annotation | ||
| IL_4V8E_383 | No text annotation | ||
| IL_4V8E_385 | No text annotation | ||
| IL_4V8E_230 | No text annotation | ||
| IL_4V8E_247 | No text annotation | ||
| IL_4V8E_386 | Isolated non-canonical cWW with bulges | ||
| IL_4V8E_270 | Isolated non-canonical cWW pair | ||
| IL_4V8E_273 | No text annotation | ||
| IL_4V8E_274 | No text annotation | ||
| IL_4V8E_275 | Isolated non-canonical cWW pair | ||
| IL_4V8E_292 | Isolated non-canonical cWW pair | ||
| IL_4V8E_296 | Isolated non-canonical cWW pair | ||
| IL_4V8E_305 | Isolated non-canonical cWW pair | ||
| IL_4V8E_315 | No text annotation | ||
| IL_4V8E_319 | Isolated non-canonical cWW pair | ||
| IL_4V8E_323 | No text annotation | ||
| IL_4V8E_336 | No text annotation | ||
| IL_4V8E_344 | Isolated non-canonical cWW pair | ||
| IL_4V8E_346 | Isolated non-canonical cWW pair | ||
| IL_4V8E_349 | No text annotation | ||
| IL_4V8E_353 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8E_037 | 1/AA/30:31, 1/AA/474:481, 1/AA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V8E_038 | 1/AA/30:31, 1/AA/474:484, 1/AA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4V8E_039 | 1/AA/32:35, 1/AA/445:461, 1/AA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V8E_040 | 1/AA/56:57, 1/AA/70:76, 1/AA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V8E_041 | 1/AA/269:270, 1/AA/270:271, 1/AA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V8E_042 | 1/AA/297:301, 1/AA/316:325, 1/AA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V8E_001 | 1/AA/683:689, 1/AA/773:775, 1/AA/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4V8E_002 | 1/AA/698:700, 1/AA/732:736, 1/AA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V8E_003 | 1/AA/1054:1058, 1/AA/1080:1087, 1/AA/1102:1105 | No text annotation | ||
| J3_4V8E_004 | 1/AA/1298:1303, 1/AA/1625:1627, 1/AA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V8E_005 | 1/AA/1306:1309, 1/AA/1605:1611, 1/AA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V8E_043 | 1/AA/1344:1350, 1/AA/1381:1385, 1/AA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V8E_044 | 1/AA/1424:1429, 1/AA/1564:1565, 1/AA/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V8E_006 | 1/AA/2091:2093, 1/AA/2196:2205, 1/AA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V8E_045 | 1/AA/2282:2284, 1/AA/2384:2395, 1/AA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V8E_007 | 1/AA/2295:2297, 1/AA/2321:2323, 1/AA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V8E_008 | 1/AA/2517:2520, 1/AA/2545:2547, 1/AA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V8E_009 | 1/AA/2789:2791, 1/AA/2805:2811, 1/AA/2889:2894 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_4V8E_046 | 1/AA/2814:2815, 1/AA/2831:2836, 1/AA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V8E_047 | 1/AB/11:16, 1/AB/68:69, 1/AB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V8E_048 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V8E_049 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V8E_050 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V8E_051 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V8E_052 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V8E_011 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V8E_012 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V8E_013 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V8E_075 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4V8E_015 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V8E_053 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V8E_054 | 1/BA/1003:1006, 1/BA/1023:1025, 1/BA/1036:1037 | No text annotation | ||
| J3_4V8E_016 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V8E_055 | 1/BA/1073:1074, 1/BA/1083:1086, 1/BA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V8E_017 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V8E_018 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V8E_056 | 1/CA/30:31, 1/CA/501:508, 1/CA/535:536 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V8E_057 | 1/CA/30:31, 1/CA/501:511, 1/CA/522:536 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4V8E_058 | 1/CA/32:35, 1/CA/472:488, 1/CA/495:500 | No text annotation | homologous J3_4WF9_012 J3_30040.2 | |
| J3_4V8E_059 | 1/CA/55:56, 1/CA/69:75, 1/CA/108:112 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V8E_060 | 1/CA/259:263, 1/CA/283:290, 1/CA/397:398 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V8E_061 | 1/CA/322:326, 1/CA/341:350, 1/CA/362:366 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V8E_019 | 1/CA/731:737, 1/CA/821:823, 1/CA/839:842 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V8E_020 | 1/CA/746:748, 1/CA/780:784, 1/CA/808:811 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V8E_021 | 1/CA/1100:1106, 1/CA/1126:1134, 1/CA/1149:1153 | No text annotation | ||
| J3_4V8E_076 | 1/CA/1100:1104, 1/CA/1128:1138, 1/CA/1147:1153 | No text annotation | ||
| J3_4V8E_022 | 1/CA/1345:1350, 1/CA/1672:1674, 1/CA/1687:1690 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V8E_023 | 1/CA/1353:1356, 1/CA/1652:1658, 1/CA/1667:1669 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V8E_064 | 1/CA/1391:1397, 1/CA/1428:1432, 1/CA/1449:1450 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V8E_065 | 1/CA/1471:1476, 1/CA/1612:1613, 1/CA/1616:1622 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V8E_024 | 1/CA/2114:2116, 1/CA/2219:2223, 1/CA/2236:2241 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V8E_066 | 1/CA/2295:2297, 1/CA/2397:2408, 1/CA/2434:2440 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4V8E_025 | 1/CA/2308:2310, 1/CA/2334:2336, 1/CA/2345:2350 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V8E_026 | 1/CA/2530:2533, 1/CA/2558:2560, 1/CA/2574:2580 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V8E_027 | 1/CA/2803:2805, 1/CA/2817:2822, 1/CA/2900:2904 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_4V8E_067 | 1/CA/2825:2826, 1/CA/2842:2847, 1/CA/2893:2897 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V8E_077 | 1/CB/13:18, 1/CB/70:71, 1/CB/110:112 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V8E_069 | 1/DA/46:47, 1/DA/361:367, 1/DA/393:395 | No text annotation | geometric J3_5J7L_001 J3_67856.4 | |
| J3_4V8E_070 | 1/DA/46:52, 1/DA/359:367, 1/DA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V8E_071 | 1/DA/586:588, 1/DA/651:654, 1/DA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V8E_072 | 1/DA/586:588, 1/DA/651:655, 1/DA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V8E_073 | 1/DA/672:673, 1/DA/717:725, 1/DA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V8E_028 | 1/DA/826:829, 1/DA/857:861, 1/DA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V8E_029 | 1/DA/936:939, 1/DA/1344:1350, 1/DA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V8E_030 | 1/DA/943:946, 1/DA/1235:1237, 1/DA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V8E_078 | 1/DA/955:962, 1/DA/973:984, 1/DA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V8E_032 | 1/DA/990:997, 1/DA/1044:1047, 1/DA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V8E_079 | 1/DA/1003:1006, 1/DA/1023:1025, 1/DA/1036:1037 | No text annotation | ||
| J3_4V8E_034 | 1/DA/1063:1068, 1/DA/1107:1113, 1/DA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V8E_074 | 1/DA/1073:1074, 1/DA/1083:1086, 1/DA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V8E_035 | 1/DA/1116:1118, 1/DA/1155:1159, 1/DA/1177:1184 | No text annotation | ||
| J3_4V8E_036 | 1/DA/1237:1241, 1/DA/1296:1303, 1/DA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_4V8E_001 | 1/AA/268:269, 1/AA/370:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V8E_002 | 1/AA/297:301, 1/AA/316:319, 1/AA/323:325, 1/AA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V8E_003 | 1/AA/1270:1276, 1/AA/1294:1295, 1/AA/1645:1648, 1/AA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V8E_004 | 1/AA/1310:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V8E_005 | 1/AA/1313:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V8E_006 | 1/AA/1444:1445, 1/AA/1466:1467, 1/AA/1525:1526, 1/AA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V8E_007 | 1/AA/1772:1776, 1/AA/1788:1792, 1/AA/1827:1830, 1/AA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V8E_008 | 1/AA/1833:1835, 1/AA/1905:1906, 1/AA/1924:1933, 1/AA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V8E_009 | 1/AA/2285:2289, 1/AA/2343:2347, 1/AA/2370:2372, 1/AA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V8E_010 | 1/AA/2643:2646, 1/AA/2674:2676, 1/AA/2731:2735, 1/AA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V8E_011 | 1/BA/115:122, 1/BA/239:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V8E_012 | 1/BA/142:144, 1/BA/178:183, 1/BA/194:198, 1/BA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V8E_013 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V8E_014 | 1/BC/7:10, 1/BC/26:28, 1/BC/44:50, 1/BC/66:67 | tRNA junction | homologous J4_5E81_027 J4_70449.29 | |
| J4_4V8E_015 | 1/CA/258:259, 1/CA/398:403, 1/CA/427:434, 1/CA/449:452 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V8E_016 | 1/CA/322:326, 1/CA/341:344, 1/CA/348:350, 1/CA/362:366 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V8E_017 | 1/CA/1317:1323, 1/CA/1341:1342, 1/CA/1693:1696, 1/CA/2032:2033 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V8E_018 | 1/CA/1357:1361, 1/CA/1385:1390, 1/CA/1451:1452, 1/CA/1644:1651 | No text annotation | homologous J4_7A0S_005 J4_69051.6 | |
| J4_4V8E_019 | 1/CA/1360:1361, 1/CA/1385:1390, 1/CA/1451:1452, 1/CA/1644:1650 | No text annotation | homologous J4_7A0S_006 J4_10313.5 | |
| J4_4V8E_020 | 1/CA/1491:1493, 1/CA/1514:1515, 1/CA/1572:1573, 1/CA/1594:1595 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V8E_021 | 1/CA/1804:1808, 1/CA/1820:1824, 1/CA/1859:1862, 1/CA/1998:2002 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V8E_022 | 1/CA/1865:1867, 1/CA/1928:1929, 1/CA/1947:1956, 1/CA/1990:1995 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V8E_023 | 1/CA/2298:2302, 1/CA/2356:2360, 1/CA/2383:2385, 1/CA/2394:2396 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4V8E_024 | 1/CA/2656:2659, 1/CA/2687:2689, 1/CA/2745:2749, 1/CA/2783:2785 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V8E_025 | 1/DA/115:122, 1/DA/239:240, 1/DA/286:289, 1/DA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V8E_026 | 1/DA/142:144, 1/DA/178:183, 1/DA/194:198, 1/DA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V8E_027 | 1/DA/575:577, 1/DA/764:769, 1/DA/810:821, 1/DA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V8E_028 | 1/DC/7:10, 1/DC/26:28, 1/DC/44:50, 1/DC/66:67 | tRNA junction | homologous J4_5E81_027 J4_70449.29 | |
| J5_4V8E_001 | 1/AA/47:54, 1/AA/116:121, 1/AA/130:131, 1/AA/148:150, 1/AA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V8E_002 | 1/AA/268:270, 1/AA/270:271, 1/AA/366:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | ||
| J5_4V8E_003 | 1/AA/531:533, 1/AA/560:564, 1/AA/577:579, 1/AA/1261:1262, 1/AA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V8E_004 | 1/AA/584:589, 1/AA/668:671, 1/AA/809:812, 1/AA/1195:1196, 1/AA/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4V8E_025 | 1/AA/601:604, 1/AA/624:628, 1/AA/635:638, 1/AA/650:654B, 1/AA/654S:656 | No text annotation | ||
| J5_4V8E_006 | 1/AA/1674:1682, 1/AA/1706:1707, 1/AA/1751:1752, 1/AA/1756:1764, 1/AA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V8E_007 | 1/AA/2057:2064, 1/AA/2446:2453, 1/AA/2500:2507, 1/AA/2582:2588, 1/AA/2606:2611 | No text annotation | ||
| J5_4V8E_008 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2282, 1/AA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V8E_009 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V8E_010 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V8E_011 | 1/BB/7:10, 1/BB/26:28, 1/BB/44:46, 1/BB/54:58, 1/BB/74:75 | No text annotation | ||
| J5_4V8E_012 | 1/BD/7:10, 1/BD/26:28, 1/BD/44:46, 1/BD/54:58, 1/BD/74:75 | No text annotation | ||
| J5_4V8E_013 | 1/CA/46:53, 1/CA/114:119, 1/CA/128:129, 1/CA/148:150, 1/CA/166:168 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V8E_014 | 1/CA/258:263, 1/CA/283:290, 1/CA/397:403, 1/CA/427:434, 1/CA/449:452 | No text annotation | ||
| J5_4V8E_015 | 1/CA/557:559, 1/CA/584:588, 1/CA/601:603, 1/CA/1308:1309, 1/CA/2040:2041 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V8E_016 | 1/CA/608:613, 1/CA/716:719, 1/CA/857:860, 1/CA/1241:1242, 1/CA/1297:1303 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V8E_017 | 1/CA/625:628, 1/CA/650:654, 1/CA/661:664, 1/CA/676:682, 1/CA/699:704 | No text annotation | ||
| J5_4V8E_018 | 1/CA/1722:1730, 1/CA/1754:1755, 1/CA/1783:1784, 1/CA/1788:1796, 1/CA/2011:2013 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V8E_019 | 1/CA/2080:2087, 1/CA/2459:2466, 1/CA/2513:2520, 1/CA/2595:2601, 1/CA/2619:2624 | No text annotation | ||
| J5_4V8E_020 | 1/CA/2097:2100, 1/CA/2256:2259, 1/CA/2271:2272, 1/CA/2294:2295, 1/CA/2440:2448 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V8E_021 | 1/DA/36:39, 1/DA/403:406, 1/DA/436:442, 1/DA/492:500, 1/DA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V8E_022 | 1/DA/58:61, 1/DA/106:113, 1/DA/314:316, 1/DA/337:339, 1/DA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V8E_023 | 1/DB/7:10, 1/DB/26:28, 1/DB/44:46, 1/DB/54:58, 1/DB/74:75 | No text annotation | ||
| J5_4V8E_024 | 1/DD/7:10, 1/DD/26:28, 1/DD/44:46, 1/DD/54:58, 1/DD/74:75 | No text annotation | ||
| J6_4V8E_001 | 1/AA/45:46, 1/AA/179:183, 1/AA/214:224, 1/AA/231:235, 1/AA/262:266, 1/AA/426:433 | No text annotation | ||
| J6_4V8E_002 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2284, 1/AA/2384:2395, 1/AA/2421:2435 | No text annotation | ||
| J6_4V8E_003 | 1/CA/44:45, 1/CA/169:173, 1/CA/204:214, 1/CA/221:225, 1/CA/252:256, 1/CA/454:461 | No text annotation | ||
| J6_4V8E_004 | 1/CA/2097:2100, 1/CA/2256:2259, 1/CA/2271:2272, 1/CA/2294:2297, 1/CA/2397:2408, 1/CA/2434:2448 | No text annotation | ||
| J7_4V8E_001 | 1/AA/8:15, 1/AA/525:531, 1/AA/2018:2023, 1/AA/2040:2043, 1/AA/2625:2630, 1/AA/2788:2789, 1/AA/2894:2895 | No text annotation | ||
| J7_4V8E_002 | 1/AA/817:822, 1/AA/835:836, 1/AA/943:946, 1/AA/971:976, 1/AA/987:991, 1/AA/1163:1164, 1/AA/1185:1190 | No text annotation | ||
| J7_4V8E_003 | 1/CA/8:15, 1/CA/551:557, 1/CA/2041:2046, 1/CA/2063:2066, 1/CA/2638:2643, 1/CA/2802:2803, 1/CA/2904:2905 | No text annotation | ||
| J7_4V8E_005 | 1/CA/865:870, 1/CA/883:884, 1/CA/989:992, 1/CA/1017:1023, 1/CA/1034:1038, 1/CA/1210:1211, 1/CA/1231:1236 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V8E_010 | No text annotation | ||
| J3_4V8E_014 | No text annotation | ||
| J3_4V8E_062 | No text annotation | ||
| J3_4V8E_063 | No text annotation | ||
| J3_4V8E_068 | No text annotation | ||
| J3_4V8E_031 | No text annotation | ||
| J3_4V8E_033 | No text annotation | ||
| J5_4V8E_005 | No text annotation | ||
| J7_4V8E_004 | No text annotation |
Coloring options: