HL_4V8E_069

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V8E|1|AA|U|2797, 4V8E|1|AA|C|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_069 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.399

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V8E|1|AA|C|2794
4V8E|1|AA|G|2795
4V8E|1|AA|U|2797
4V8E|1|AA|C|2798
4V8E|1|AA|A|2799
4V8E|1|AA|A|2801
4V8E|1|AA|G|2802

Current chains

Chain AA

RNA (2912-MER)

Nearby chains