HL_4V8E_091

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V8E|1|BA|U|841, 4V8E|1|BA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_091 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.252

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V8E|1|BA|G|837
4V8E|1|BA|G|838
4V8E|1|BA|U|841
4V8E|1|BA|C|842
4V8E|1|BA|U|843
4V8E|1|BA|C|848
4V8E|1|BA|C|849

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S RIBOSOMAL PROTEIN S2

Chain BU

30S RIBOSOMAL PROTEIN S18