HL_4V8E_129

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V8E|1|CA|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_129 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0958

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|G|410
4V8E|1|CA|U|411
4V8E|1|CA|U|412
4V8E|1|CA|C|413
4V8E|1|CA|G|414
4V8E|1|CA|U|415
4V8E|1|CA|G|416
4V8E|1|CA|G|417
4V8E|1|CA|A|418
4V8E|1|CA|G|419
4V8E|1|CA|C|420

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CO

50S ribosomal protein L15

Chain CZ

50S ribosomal protein L28