HL_4V8E_130

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V8E|1|CA|G|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_130 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1117

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V8E|1|CA|G|438
4V8E|1|CA|G|439
4V8E|1|CA|A|440
4V8E|1|CA|C|441
4V8E|1|CA|C|442
4V8E|1|CA|A|443
4V8E|1|CA|C|444
4V8E|1|CA|C|445

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CO

50S ribosomal protein L15

Chain CZ

50S ribosomal protein L28