HL_4V8E_133

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_133 not in the Motif Atlas

Geometric match to HL_5TBW_017

Geometric discrepancy: 0.1568

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8E|1|CA|C|569
4V8E|1|CA|G|570
4V8E|1|CA|C|571
4V8E|1|CA|A|572
4V8E|1|CA|A|573
4V8E|1|CA|G|574

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C2

50S ribosomal protein L21

Chain CM

50S ribosomal protein L13