HL_4V8E_136

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_136 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.1387

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8E|1|CA|G|655
4V8E|1|CA|G|656
4V8E|1|CA|A|657
4V8E|1|CA|A|658
4V8E|1|CA|A|659
4V8E|1|CA|C|660

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CO

50S ribosomal protein L15