HL_4V8E_142

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V8E|1|CA|U|875, 4V8E|1|CA|G|878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_142 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1547

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|U|874
4V8E|1|CA|U|875
4V8E|1|CA|U|876
4V8E|1|CA|A|877
4V8E|1|CA|G|878
4V8E|1|CA|G|879

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CO

50S ribosomal protein L15