HL_4V8E_146

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V8E|1|CA|A|1114, 4V8E|1|CA|A|1117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_146 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3974

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|1111
4V8E|1|CA|U|1112
4V8E|1|CA|U|1113
4V8E|1|CA|A|1114
4V8E|1|CA|G|1115
4V8E|1|CA|A|1116
4V8E|1|CA|A|1117
4V8E|1|CA|G|1118
4V8E|1|CA|C|1119
4V8E|1|CA|A|1120
4V8E|1|CA|G|1121

Current chains

Chain CA

RNA (2912-MER)

Nearby chains