HL_4V8E_153

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V8E|1|CA|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_153 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0941

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V8E|1|CA|G|1436
4V8E|1|CA|U|1437
4V8E|1|CA|U|1438
4V8E|1|CA|A|1439
4V8E|1|CA|A|1440
4V8E|1|CA|U|1441
4V8E|1|CA|A|1442
4V8E|1|CA|U|1443
4V8E|1|CA|U|1444
4V8E|1|CA|C|1445

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CT

50S ribosomal protein L23