HL_4V8E_154

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_154 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.1327

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8E|1|CA|C|1500
4V8E|1|CA|A|1501
4V8E|1|CA|U|1502
4V8E|1|CA|G|1503
4V8E|1|CA|G|1504
4V8E|1|CA|A|1505
4V8E|1|CA|C|1506
4V8E|1|CA|G|1507

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17