HL_4V8E_155

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4V8E|1|CA|C|1540, 4V8E|1|CA|U|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_155 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1865

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|G|1539
4V8E|1|CA|C|1540
4V8E|1|CA|A|1541
4V8E|1|CA|A|1542
4V8E|1|CA|A|1543
4V8E|1|CA|U|1544
4V8E|1|CA|C|1545

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2