HL_4V8E_158

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V8E|1|CA|A|1661, 4V8E|1|CA|A|1663, 4V8E|1|CA|A|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_158 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0829

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8E|1|CA|C|1659
4V8E|1|CA|G|1660
4V8E|1|CA|A|1661
4V8E|1|CA|C|1662
4V8E|1|CA|A|1663
4V8E|1|CA|C|1664
4V8E|1|CA|A|1665
4V8E|1|CA|G|1666

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CS

50S ribosomal protein L22