3D structure

PDB id
4V8E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUCCGG
Length
6 nucleotides
Bulged bases
4V8E|1|CA|C|2168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8E_169 not in the Motif Atlas
Homologous match to HL_7RQB_051
Geometric discrepancy: 0.5245
The information below is about HL_7RQB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8E|1|CA|C|2166
4V8E|1|CA|U|2167
4V8E|1|CA|C|2168
4V8E|1|CA|C|2169
4V8E|1|CA|G|2170
4V8E|1|CA|G|2171

Current chains

Chain CA
RNA (2912-MER)

Nearby chains

Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain DN
30S RIBOSOMAL PROTEIN S11

Coloring options:


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