HL_4V8E_174

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_174 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0917

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V8E|1|CA|C|2337
4V8E|1|CA|G|2338
4V8E|1|CA|C|2339
4V8E|1|CA|A|2340
4V8E|1|CA|A|2341
4V8E|1|CA|G|2342
4V8E|1|CA|G|2343
4V8E|1|CA|G|2344

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C3

50S ribosomal protein L27

Chain CG

50S ribosomal protein L5

Chain CP

50S ribosomal protein L16

Chain DC

Transfer RNA; tRNA