HL_4V8E_177

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V8E|1|CA|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_177 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1169

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V8E|1|CA|C|2417
4V8E|1|CA|G|2418
4V8E|1|CA|U|2419
4V8E|1|CA|G|2420
4V8E|1|CA|U|2421
4V8E|1|CA|G|2422
4V8E|1|CA|G|2423
4V8E|1|CA|A|2424
4V8E|1|CA|A|2425
4V8E|1|CA|G|2426

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CO

50S ribosomal protein L15

Chain CZ

50S ribosomal protein L28