HL_4V8E_185

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V8E|1|CA|U|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_185 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2891

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8E|1|CA|C|2808
4V8E|1|CA|G|2809
4V8E|1|CA|U|2810
4V8E|1|CA|C|2811
4V8E|1|CA|A|2812
4V8E|1|CA|A|2813
4V8E|1|CA|G|2814

Current chains

Chain CA

RNA (2912-MER)

Nearby chains