HL_4V8E_186

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V8E|1|CA|A|2831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_186 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0714

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8E|1|CA|G|2830
4V8E|1|CA|A|2831
4V8E|1|CA|A|2832
4V8E|1|CA|G|2833
4V8E|1|CA|A|2834
4V8E|1|CA|C|2835
4V8E|1|CA|C|2836
4V8E|1|CA|A|2837
4V8E|1|CA|C|2838

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3