HL_4V8E_230
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- ACUGUA(MIA)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8E_230 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.2208
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8E|1|DD|A|32
4V8E|1|DD|C|33
4V8E|1|DD|U|34
4V8E|1|DD|G|35
4V8E|1|DD|U|36
4V8E|1|DD|A|37
4V8E|1|DD|MIA|38
4V8E|1|DD|A|39
4V8E|1|DD|U|40
Current chains
- Chain DD
- TRNA-TYR
Nearby chains
- Chain D1
- MRNA
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- Transfer RNA; tRNA
- Chain DJ
- 30S RIBOSOMAL PROTEIN S7
- Chain DN
- 30S RIBOSOMAL PROTEIN S11
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