HL_4V8E_246

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4V8E|1|DA|U|188, 4V8E|1|DA|U|189, 4V8E|1|DA|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_246 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.338

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V8E|1|DA|C|186|||E
4V8E|1|DA|C|186|||F
4V8E|1|DA|C|187
4V8E|1|DA|U|188
4V8E|1|DA|U|189
4V8E|1|DA|G|190
4V8E|1|DA|G|191|||A
4V8E|1|DA|G|191|||B

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DT

30S RIBOSOMAL PROTEIN S17