HL_4V8F_003

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4V8F|1|AA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_003 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.0939

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8F|1|AA|G|123
4V8F|1|AA|G|124
4V8F|1|AA|G|125
4V8F|1|AA|A|126
4V8F|1|AA|A|127
4V8F|1|AA|C|128

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AT

50S ribosomal protein L23