HL_4V8F_005

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_005 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.287

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8F|1|AA|C|155
4V8F|1|AA|U|161
4V8F|1|AA|U|162
4V8F|1|AA|U|163
4V8F|1|AA|U|164
4V8F|1|AA|U|165
4V8F|1|AA|G|171

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AZ

50S ribosomal protein L28