HL_4V8F_030

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V8F|1|AA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_030 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4823

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8F|1|AA|C|1064
4V8F|1|AA|U|1065
4V8F|1|AA|U|1066
4V8F|1|AA|A|1067
4V8F|1|AA|G|1068
4V8F|1|AA|A|1069
4V8F|1|AA|A|1070
4V8F|1|AA|G|1071
4V8F|1|AA|C|1072
4V8F|1|AA|A|1073
4V8F|1|AA|G|1074

Current chains

Chain AA

RNA (2912-MER)

Nearby chains