HL_4V8F_052

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V8F|1|AA|A|2030, 4V8F|1|AA|A|2031, 4V8F|1|AA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_052 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0912

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8F|1|AA|G|2027
4V8F|1|AA|U|2028
4V8F|1|AA|G|2029
4V8F|1|AA|A|2030
4V8F|1|AA|A|2031
4V8F|1|AA|G|2032
4V8F|1|AA|A|2033
4V8F|1|AA|U|2034
4V8F|1|AA|G|2035
4V8F|1|AA|C|2036

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A2

50S ribosomal protein L21

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3