HL_4V8F_098

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4V8F|1|BA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_098 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1015

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8F|1|BA|G|1089
4V8F|1|BA|U|1090
4V8F|1|BA|U|1091
4V8F|1|BA|A|1092
4V8F|1|BA|A|1093
4V8F|1|BA|G|1094
4V8F|1|BA|U|1095
4V8F|1|BA|C|1096

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S RIBOSOMAL PROTEIN S2

Chain BJ

30S RIBOSOMAL PROTEIN S7