HL_4V8F_110

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

4V8F|1|BC|G|19, 4V8F|1|BC|G|20, 4V8F|1|BC|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_110 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.1548

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V8F|1|BC|C|13
4V8F|1|BC|A|14
4V8F|1|BC|G|15
4V8F|1|BC|C|16
4V8F|1|BC|C|17
4V8F|1|BC|C|18
4V8F|1|BC|G|19
4V8F|1|BC|G|20
4V8F|1|BC|U|21
4V8F|1|BC|A|22
4V8F|1|BC|G|23

Current chains

Chain BC

TRNA-FMET

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

50S ribosomal protein L5