3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GCUCAUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_111 not in the Motif Atlas
Homologous match to HL_5E81_212
Geometric discrepancy: 0.0677
The information below is about HL_5E81_212
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.6
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

4V8F|1|BC|G|32
4V8F|1|BC|C|33
4V8F|1|BC|U|34
4V8F|1|BC|C|35
4V8F|1|BC|A|36
4V8F|1|BC|U|37
4V8F|1|BC|A|38
4V8F|1|BC|A|39
4V8F|1|BC|C|40

Current chains

Chain BC
TRNA-FMET

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain B1
MRNA
Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
TRNA-TYR
Chain BL
30S RIBOSOMAL PROTEIN S9

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