HL_4V8F_112
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_112 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.1134
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V8F|1|BC|G|54
4V8F|1|BC|U|55
4V8F|1|BC|U|56
4V8F|1|BC|C|57
4V8F|1|BC|A|58
4V8F|1|BC|A|59
4V8F|1|BC|A|60
4V8F|1|BC|U|61
4V8F|1|BC|C|62
Current chains
- Chain BC
- TRNA-FMET
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AP
- 50S ribosomal protein L16
Coloring options: