3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUUCAAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_112 not in the Motif Atlas
Homologous match to HL_4V9Q_215
Geometric discrepancy: 0.1134
The information below is about HL_4V9Q_215
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

4V8F|1|BC|G|54
4V8F|1|BC|U|55
4V8F|1|BC|U|56
4V8F|1|BC|C|57
4V8F|1|BC|A|58
4V8F|1|BC|A|59
4V8F|1|BC|A|60
4V8F|1|BC|U|61
4V8F|1|BC|C|62

Current chains

Chain BC
TRNA-FMET

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain AG
50S ribosomal protein L5
Chain AP
50S ribosomal protein L16

Coloring options:


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