HL_4V8F_116

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGUUCGAAUCCU

Length

13 nucleotides

Bulged bases

4V8F|1|BD|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_116 not in the Motif Atlas

Geometric match to HL_5EL4_250

Geometric discrepancy: 0.3373

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V8F|1|BD|A|60
4V8F|1|BD|G|61
4V8F|1|BD|G|62
4V8F|1|BD|U|63
4V8F|1|BD|U|64
4V8F|1|BD|C|65
4V8F|1|BD|G|66
4V8F|1|BD|A|67
4V8F|1|BD|A|68
4V8F|1|BD|U|69
4V8F|1|BD|C|70
4V8F|1|BD|C|71
4V8F|1|BD|U|72

Current chains

Chain BD

TRNA-TYR

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA