HL_4V8F_144

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

4V8F|1|CA|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_144 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.3544

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V8F|1|CA|G|1265
4V8F|1|CA|G|1266
4V8F|1|CA|C|1267
4V8F|1|CA|A|1268
4V8F|1|CA|A|1269
4V8F|1|CA|C|1270

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S13

Chain CX

30S RIBOSOMAL PROTEIN THX