HL_4V8F_147

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V8F|1|CA|U|1450, 4V8F|1|CA|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_147 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2134

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

4V8F|1|CA|C|1449
4V8F|1|CA|U|1450
4V8F|1|CA|A|1451
4V8F|1|CA|C|1452
4V8F|1|CA|G|1453
4V8F|1|CA|G|1454

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20